Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 679 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 501 / 6e-171 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 443 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 394 / 2e-129 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 394 / 4e-129 RKL1 receptor-like kinase 1 (.1) AT3G02880 392 / 5e-129 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 384 / 1e-125 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G17840 351 / 1e-112 RLK902 receptor-like kinase 902 (.1) AT1G64210 340 / 2e-109 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 337 / 7e-108 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017756 [exp] 976 / 0 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 496 / 5e-169 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 493 / 6e-168 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 478 / 8e-162 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 473 / 4e-160 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017996 [exp] 393 / 7e-129 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10004040 [exp] 392 / 1e-128 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10021383 [exp] 390 / 1e-127 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10027568 [exp] 388 / 3e-127 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074300 [exp] 776 / 0 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 507 / 2e-173 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 501 / 2e-171 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 473 / 3e-160 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 460 / 2e-154 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 434 / 5e-145 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 433 / 7e-145 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 421 / 6e-140 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 400 / 1e-131 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.004G086100 [exp] 391 / 1e-128 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033065 pacid=23176994 polypeptide=Lus10033065 locus=Lus10033065.g ID=Lus10033065.BGIv1.0 annot-version=v1.0 ATGGCGAGGGTTTCTGTATCACTAGCTTTGTTTCTCTTGGCATTGGTGCTGCTCAACAACGGTGGAGCGGTGGCGGAACCATTGGAGGACAAGCAAGCTC TCCTTGCTTTTATCTCGAAGATCCCTCACGGATATCGCCTTCAGTGGAGCCAGAACGCTTCGGCTTGCGGCTGGGTTGGAGTCGGATGCGACGCTAATCA GTCCGCCGTCCATACTCTCCGTCTCCCGGGAGCCGACCTAGTGGGGCCAATTCCGCCAAACACTCTGGGGGAGCTTTCACAGCTCAGAGTGTTGAGCCTC CGCTCCAACCGTTTGTCCGGTGAGATCCCGCCCGATTTCTCCAATTTGACTTTCCTCCGCAGCCTCTACTTGCAGAACAACGCCTTCTCCGGCGGGTTCC CAGCCAGTGTGACTCGCTTGACCAGGCTGGCTCGTCTTGACCTCTCATCCAACAACTTCACTGGTCCTATCCCGTTCTCCGTCAACAATTGGACTCAATT GACCGGCCTGTTTTTAGAGAACAACCGATTTTCTGGTCCTTTGCCTAGCATCTCTTCTAGTTTGGCAGGGTTCAATGTCTCCAACAACAATCTCAACGGT TCAATCCCTAGAAATCTGCAGAGATTCCCTGCAACATCTTTTGCCGGGAATTTAGATCTGTGCGGTGGACCATTGCCGCCCTGCACTCCGTTCTTTCCTT CTCCGAGTCCAGCTCCTTCAACGATTGAACCATTCCTCCCAACTCACCAGAAATCGAAAAAGCTCTCAACCTTGGCTATTGTTCTAATCTCAGTCGGTGG AGCCCTAGCCCTGTTTTTACTCCTCCTTTTGCTCCTCTGCTGCCTCCGGAAGAAAAATAGGCAACAGTCTCCAAAACCACCAAAGCCAGTTGGCGCCGCA CGCTCCGTGCCGGTGGAAGCAGGGACGTCATCATCGAAGGACGACATCACCGGCGCGTCGGCGGACGTGGAGAGGAACAAGCTAGTGTTCTTCGAAGGGG GAGTCTACAGCTTCGACCTAGAAGATCTGTTGAGAGCTTCGGCGGAGGTTCTAGGGAAAGGAAGCGTCGGAACATCGTACAAGGCGGTGTTAGAAGACGG GACGACGGTGGTGGTGAAGCGGCTGAAGGACGTGGCGGTGACGAAGTTTTTTGTTTGCAGCAGAGGTTCAGGGAGAACACCATTGGACTGGGACAGCAGA ATGAAGATAGCAGTGAGCTCAGCCAAGGGGATAGCCGACCTCCACGCAGCAGGTAAAGTCCCTCACGGGAATATCAAATCGTCCAACATCCTCCTCCGCC AGGACCATGAAGGTGCAGTCTCCGATTACGGTCTAAACCCTCTGTTCGGCACATCAACCCCTCCCAGCAGAGTAGCAGGCTACCGTGCCCCCGAGGTAGT CGAGACTCGTAAGGTGACATTCAAGTCAGATGTGTACAGCTTTGGCGTTCTCCTCCTGGAGCTCCTGACGGGTAAAGCCCCTAACCAGGCGTCACTAGGA GAGGAAGGGATCGACCTGCCGCGATGGGTGCAGTCAGTGGTGAGGGAGGAGTGGACGGCGGAGGTGTTTGACGTAGAGCTAATGAGATACAACAACATTG AGGATGAGATGGTCCAGCTGCTTCAGATTGCAATGACGTGTGTTTCGACTGTGCCTGATCAGAGACCGGAGATGGGCGAAGTGGTGCGGATGATGGAGGA AATTAACAGAGGGGAGACAACCGACGAGGGGCTTCGGCAGTCTTCAGATGATCCTTCCAAAGGGTCGGATGGGCAGACTCCTCCTACTGATAACAGGCCC ACTCCTACGCCTTGA
AA sequence Show only first row Show all	>Lus10033065 pacid=23176994 polypeptide=Lus10033065 locus=Lus10033065.g ID=Lus10033065.BGIv1.0 annot-version=v1.0 MARVSVSLALFLLALVLLNNGGAVAEPLEDKQALLAFISKIPHGYRLQWSQNASACGWVGVGCDANQSAVHTLRLPGADLVGPIPPNTLGELSQLRVLSL RSNRLSGEIPPDFSNLTFLRSLYLQNNAFSGGFPASVTRLTRLARLDLSSNNFTGPIPFSVNNWTQLTGLFLENNRFSGPLPSISSSLAGFNVSNNNLNG SIPRNLQRFPATSFAGNLDLCGGPLPPCTPFFPSPSPAPSTIEPFLPTHQKSKKLSTLAIVLISVGGALALFLLLLLLLCCLRKKNRQQSPKPPKPVGAA RSVPVEAGTSSSKDDITGASADVERNKLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEDGTTVVVKRLKDVAVTKFFVCSRGSGRTPLDWDSR MKIAVSSAKGIADLHAAGKVPHGNIKSSNILLRQDHEGAVSDYGLNPLFGTSTPPSRVAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKAPNQASLG EEGIDLPRWVQSVVREEWTAEVFDVELMRYNNIEDEMVQLLQIAMTCVSTVPDQRPEMGEVVRMMEEINRGETTDEGLRQSSDDPSKGSDGQTPPTDNRP TPTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	0	1
AT5G52540			Protein of unknown function (D...		Lus10027508 [exp]	2.0	0.8956
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	3.5	0.9038
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	3.9	0.8957
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	4.0	0.9060
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	5.9	0.8903
AT3G56130			biotin/lipoyl attachment domai...		Lus10010226 [exp]	6.9	0.8504
AT3G55420			unknown protein		Lus10023413 [exp]	8.9	0.8117
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	10.1	0.8913
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	10.5	0.8939
AT4G23490			Protein of unknown function (D...		Lus10032293 [exp]	11.6	0.8813

Compare expression of checked genes

Lus10033065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.