Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19930 340 / 1e-117 Protein of unknown function DUF92, transmembrane (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017753 [exp] 448 / 1e-160 AT5G19930 402 / 1e-142 Protein of unknown function DUF92, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073000 [exp] 356 / 4e-124 AT5G19930 381 / 3e-134 Protein of unknown function DUF92, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01940 [flax] [poplar] DUF92 Integral membrane protein DUF92
Representative CDS sequence Show only first row Show all	>Lus10033068 pacid=23177008 polypeptide=Lus10033068 locus=Lus10033068.g ID=Lus10033068.BGIv1.0 annot-version=v1.0 ATGGAGAAGATGGCCTTTGTTCAGCCATTAATCGCCGTCTTAATCTCTTCCGCTGTCGCGATCAGAGCTTACCGGAAGAACTCCCTTAACCTTTCCGGGG CAGTTGCTGGATTCCTTGTAATGACTCTTCACTTTGCGGTCAATTACAGGTCCCCCCTCAGATTTTCTAATTATGCTGCCTGTTCTTCGAAGCTCACAAA GGTTGGACAAGAGAAGAAGAAGCAAATTGATGCTGATTTCAAGGACGGTGGACAAAGAAACTGGATACAAGTTATTTCTAATAGTGGAATTGCATCAGCG TTGGCTTTGATTATATGGAATCTGAACGGGTCAGAGGACCGGTGCTTGGATACGAATCAGTCAACAACTACTATCACTGCTCTCATTGGTGGTATCCTCG GTCACTATTGCTGCTGCAATGGAGATACCTGGTCTTCAGAGCTTGGGGTACTCAGTGATGCACAACCGCGATTGATCACAACGTTCAAGCATGTTCGGAA GGGTACAAATGGTGGGGTTACAAATGCTGGACTCGTAGCAGCTGCAGCTGCAGGTGGTGTCATCGGACTTGCATTCGTGCTCTTTGGATTCCTGACGACA AAATGCACGTTTGAAGTTGCTCTGAAGCAGCTCTTAGTTATACCTCTGTCTGCAGCAGCTGGTCTTTGTGGAAGTTTGATAGATTCTATTCTTGGAGCCA CACTGCAGTTCAGTGGATTCTGCACTATTCGTAACAGAGTTGTTGGGAAACCAGGACCAACAGTGAAGAGAATTTCAGGGATCAGCATTCTGGACAACAA CGCAGTGAACTTTGTATCCGTGCTTCTGACCTCTGTACTAACTTCCATTGCTTGTGCCTATATCTTTTGA
AA sequence Show only first row Show all	>Lus10033068 pacid=23177008 polypeptide=Lus10033068 locus=Lus10033068.g ID=Lus10033068.BGIv1.0 annot-version=v1.0 MEKMAFVQPLIAVLISSAVAIRAYRKNSLNLSGAVAGFLVMTLHFAVNYRSPLRFSNYAACSSKLTKVGQEKKKQIDADFKDGGQRNWIQVISNSGIASA LALIIWNLNGSEDRCLDTNQSTTTITALIGGILGHYCCCNGDTWSSELGVLSDAQPRLITTFKHVRKGTNGGVTNAGLVAAAAAGGVIGLAFVLFGFLTT KCTFEVALKQLLVIPLSAAAGLCGSLIDSILGATLQFSGFCTIRNRVVGKPGPTVKRISGISILDNNAVNFVSVLLTSVLTSIACAYIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	0	1
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	2.0	0.9506
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	2.4	0.9262
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	3.9	0.9249
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	6.3	0.9352
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	8.0	0.9214
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10039375 [exp]	10.2	0.9071
AT2G35736			unknown protein		Lus10004354 [exp]	12.3	0.8950
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	12.7	0.9247
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	13.0	0.9130
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	13.4	0.9033

Compare expression of checked genes

Lus10033068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.