Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25510 513 / 2e-178 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 412 / 1e-138 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 412 / 4e-138 Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 407 / 9e-137 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 400 / 7e-134 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G09880 388 / 2e-129 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 386 / 8e-129 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 367 / 2e-121 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G54930 334 / 2e-108 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017752 [exp] 829 / 0 AT5G25510 628 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10010426 [exp] 689 / 0 AT5G25510 608 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10012116 [exp] 669 / 0 AT5G25510 598 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10013141 [exp] 509 / 6e-177 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10008104 [exp] 475 / 1e-164 AT5G25510 723 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10015144 [exp] 426 / 3e-144 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 425 / 1e-143 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 422 / 2e-142 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 412 / 7e-138 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073925 [exp] 653 / 0 AT5G25510 609 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 521 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 514 / 1e-178 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 420 / 3e-141 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G179900 [exp] 419 / 3e-141 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054300 [exp] 419 / 3e-141 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 418 / 8e-141 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.002G226200 [exp] 415 / 2e-139 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054400 [exp] 412 / 2e-138 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 409 / 2e-137 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10033069 pacid=23176972 polypeptide=Lus10033069 locus=Lus10033069.g ID=Lus10033069.BGIv1.0 annot-version=v1.0 ATGCTCAAGCAAATTCTTAGTAAAATTCCCCGCAAGTCTCCAAAATCTGACCAACTAGAGGCCACAGTGATTAATGATAGTGGCAATCCTCCAAACTTGG GCAATGGAGCTCCCTGTACCAATGGAGGAAACTCGTTTTCGAGTCGGTTGAATGTTGTTAAAAGGGTATCCTCGGCCGTTTTCCCTTCGAGCATTATGGC AGGAGTTGATGCAGTGGAGCCCCATCTATCCTTCAAGGATGTTTCTTCAGCTGCGCAGAAACAGAATCTGTTTGTTAGTAAACTAAACCTTTGCTGTGAG ACACCTGATTATAGTGATCCAGACAAGACCGATGCCCAGGTAGATCTTAAACGAGAAGCATTGGTGGAGCTTGTTGATTTTGTTTCTTCAGGATCAGCAA AGTTCACTGAACCAGCCATTGTAGCAATGTGTAAGATGTGTGCAACAAACCTTTTCAGGGTCTTCCCTCCTAAGTATCGCTCCAGTGGTGGAGAAACTGA AGATGAAGAGCCAATGTTTGATCCTGCTTGGTCATATTTACAAATTGTATACGATCTGCTGATTGTATACGATCTGTTACTTCGTTTCACAAGTTTAGTG GATGCAAAGATGGCAAAGAAGCATGTTGATCATGCTTTCGTGTTGGGAGTACTTGACCTATTTGATTCTGATGATCCAAGAGAACGGGAATGTTTGAAAA CTGTTCTACATAGGATTTATGGAAAATTCATGGTACACAGGCCCTTCATAAGAAAAGGTGTCAGCAATATCATCTACCGGTTTGTGTATGAGACTGAACG GCATAATGGAATTGCTGAGCTATTGGAGATCTTCGGTAGCATTATTAGCGGGTTTGCTCTACCTTTGAAGGAAGAGCACAAGTTGTTTCTGTGGAGGGCT TTGTTACCTCTGCATAAACCGAAATCTGTTGGCATTTATCATCAACAGTTAACATTTTGTGTTGTGCAGTTTGTGGACAAGGATCCCAAATTGGCTGCTT TAGTGATCAAAGGCCTATTGAAGTACTGGCCATTGACCAACAGCCAAAAGGAGTTGATGTTTATAAGTGAGCTAGAAGAGATTTTGGAAATGACCGGCAT GGACGAGTTTCACAAGGTCATGGTGCCATTGTTTCGCCGAATAGGGGCTTGTCTCAATAGTTCTCATTATCAGGCACGCACTATTCTTGAAGTGGCAGAA CGAGCTCACTTGCTATGGAACAACGAGCGGATTGTGAACCATCTTATTGTACAGAATCGGCAGTCAGAACCACTGGAACCAAGCAGTTCTGAACCTGACA CAATACATAAGGAAGATATTCCTGGAGATGGACGAGGAGCTAATGATGGCGTGCCAGCGCAAGTCGGAGGAAGAACATTCAAAGCCAAATATGGTGGCAG AGAAGAGGAGATTAACCTGGGAAAACTTGGAAAATGCTGCTGGAACAGGCTTCATCAACTCACCCATTTCCCTCAGCTCGAACATAGCACACATAGAACC AGCAACAACATGTTCTGTTGCCTGCTAGTGATACAGCTATTCCGAAAAAATGCGGGACATCAGAAGAGTCCCGATGATGGCGATGGTGATGATGATGATG ATGATGTTGTTTGTAGTTTTGTATCAAAAGAAGTGGTAAATATGGCTGCCTGCCTTAGTTCTAAAAGGATTGCTTGGGATGCAATGGTGGCGGAGGTGGT GCAACTGGAGGAGCCCCTTAAACTTGCATTTTAA
AA sequence Show only first row Show all	>Lus10033069 pacid=23176972 polypeptide=Lus10033069 locus=Lus10033069.g ID=Lus10033069.BGIv1.0 annot-version=v1.0 MLKQILSKIPRKSPKSDQLEATVINDSGNPPNLGNGAPCTNGGNSFSSRLNVVKRVSSAVFPSSIMAGVDAVEPHLSFKDVSSAAQKQNLFVSKLNLCCE TPDYSDPDKTDAQVDLKREALVELVDFVSSGSAKFTEPAIVAMCKMCATNLFRVFPPKYRSSGGETEDEEPMFDPAWSYLQIVYDLLIVYDLLLRFTSLV DAKMAKKHVDHAFVLGVLDLFDSDDPRERECLKTVLHRIYGKFMVHRPFIRKGVSNIIYRFVYETERHNGIAELLEIFGSIISGFALPLKEEHKLFLWRA LLPLHKPKSVGIYHQQLTFCVVQFVDKDPKLAALVIKGLLKYWPLTNSQKELMFISELEEILEMTGMDEFHKVMVPLFRRIGACLNSSHYQARTILEVAE RAHLLWNNERIVNHLIVQNRQSEPLEPSSSEPDTIHKEDIPGDGRGANDGVPAQVGGRTFKAKYGGREEEINLGKLGKCCWNRLHQLTHFPQLEHSTHRT SNNMFCCLLVIQLFRKNAGHQKSPDDGDGDDDDDDVVCSFVSKEVVNMAACLSSKRIAWDAMVAEVVQLEEPLKLAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	0	1
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	2.0	0.8525
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	2.4	0.8525
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	3.9	0.8342
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	4.0	0.8560
AT3G18050			unknown protein		Lus10038961 [exp]	4.9	0.8169
AT5G14790			ARM repeat superfamily protein...		Lus10014533 [exp]	5.5	0.8302
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	7.7	0.8048
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10020898 [exp]	11.0	0.7942
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	13.6	0.8345
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	13.7	0.7928

Compare expression of checked genes

Lus10033069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.