Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033089 [exp] 129 / 1e-32 ND / Lus10006097 [exp] 103 / 6e-26 AT4G29090 43 / 8e-05 Ribonuclease H-like superfamily protein (.1) Lus10017075 [exp] 88 / 4e-21 ND / Lus10017303 [exp] 68 / 6e-14 ND / Lus10041736 [exp] 68 / 3e-13 ND 37 / 0.006 Lus10001001 [exp] 67 / 6e-12 AT4G37190 605 / 0.0 unknown protein Lus10019746 [exp] 54 / 3e-08 ND / Lus10033553 [exp] 48 / 8e-06 AT1G13340 107 / 6e-26 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10042896 [exp] 0 / 1 AT3G60380 91 / 1e-18 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033071 pacid=23177054 polypeptide=Lus10033071 locus=Lus10033071.g ID=Lus10033071.BGIv1.0 annot-version=v1.0 ATGCCCTATTTGTGGCATGTTCGAGGAAACACAACGACAATCAGTGCAGTTGCAGCAACCTTCGCAGCACAAGGACGTTTTTGGCGGCCATCTCCACAAG AAGAATGGATTATTCATGTAGATGTTGCGGCTAGGGTCATTGACATGATTCCACGATTTGGAGCGATTGGTACGGTGGTCCGCCGCTCGTGTGGCTCCTT GGTTTCTGCGACTGCTCATGTACTCACACATTTCACGGATCCACTTCTTTTGGAGTTCCTTGCAATTTGTCAAGTCTTATATGTTGCTCAGTATAGATAC CAGAAAAGCTTCATTATCTACTCAGACTCGGCAGAAGCTATTCGCCTCATCAACTCTTCCATCTTGGACACAAGGGTGGGTCAAGTTCTTCCAAAATGTG AAGATCTTCTTCATGCTCTTCCTTTAGTCTCTCTTTTTCATGTGTCTCGTTTGAGTAATAGCGTCGCCTATCTTGTGGCATCGACTTTTTTCGGTCGCAA CCTTCACACCTGCCGGCTGCCGCCAACCTCCCAAGCTGGTCGACGACCATCCCTGTCCACCTCTGTCAGCAGCCATCTACTAGTAACCTCCACCACCAGT CTCCAGCCATCGTTCACCGACCACCTCTGCCATCAGTCGCCAACCATCCTCCGTCGCATTTTTTGGTCGCCAACCGTCGTCCTCGGCAACCTCCATTGCA GATCGCCAACCATCATCTGTTGGCAATCTCCTCCGCCCGCAACCTCTGTCGTCTATCGCCGACCACCATCATCAGTCACCATCCGCCTGCGTGGAGTCAC AGCTACCATCGATCGTCAGTCACGGTCTCCAACAACTTTAGTTGATATCTCCTGGCAACTCGGCCATCTAGAGTCACCTCTATCTCCCGACCACTTCAAC CACCATCCGCCGGTACTTCCGCTGGCAACTTCCGCAATCTGGAGTCACCTTTATCTGTCATCTGCCGCCATTGTCGTTGTCTCGTTGCCAATTCTGTCGG CAACCACCGCTGCTAGGAACCGACCTGCTTCGCCACCGGCCTGCTGTGAGAGCTTTCGGTTTTGCTATATTTTTATAATTGTGTATCGTTTGATGGAGAA GTGTGTATATTCTATTTGA
AA sequence Show only first row Show all	>Lus10033071 pacid=23177054 polypeptide=Lus10033071 locus=Lus10033071.g ID=Lus10033071.BGIv1.0 annot-version=v1.0 MPYLWHVRGNTTTISAVAATFAAQGRFWRPSPQEEWIIHVDVAARVIDMIPRFGAIGTVVRRSCGSLVSATAHVLTHFTDPLLLEFLAICQVLYVAQYRY QKSFIIYSDSAEAIRLINSSILDTRVGQVLPKCEDLLHALPLVSLFHVSRLSNSVAYLVASTFFGRNLHTCRLPPTSQAGRRPSLSTSVSSHLLVTSTTS LQPSFTDHLCHQSPTILRRIFWSPTVVLGNLHCRSPTIICWQSPPPATSVVYRRPPSSVTIRLRGVTATIDRQSRSPTTLVDISWQLGHLESPLSPDHFN HHPPVLPLATSAIWSHLYLSSAAIVVVSLPILSATTAARNRPASPPACCESFRFCYIFIIVYRLMEKCVYSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033071 [exp]	0	1
					Lus10003695 [exp]	2.2	1.0000
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	3.5	1.0000
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	4.2	1.0000
					Lus10020958 [exp]	4.9	1.0000
					Lus10021906 [exp]	5.5	1.0000
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	6.0	1.0000
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	6.2	0.9159
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10014900 [exp]	7.5	0.9082
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	7.5	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	8.0	1.0000

Compare expression of checked genes

Lus10033071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.