Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 579 / 0 FATB fatty acyl-ACP thioesterases B (.1) AT4G13050 269 / 4e-87 Acyl-ACP thioesterase (.1) AT3G25110 262 / 2e-84 ATFATA fatA acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017751 [exp] 825 / 0 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 303 / 9e-100 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 300 / 3e-98 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10035900 [exp] 292 / 5e-96 AT1G08510 278 / 1e-90 fatty acyl-ACP thioesterases B (.1) Lus10035901 [exp] 286 / 3e-93 AT1G08510 269 / 7e-87 fatty acyl-ACP thioesterases B (.1) Lus10025762 [exp] 284 / 1e-92 AT1G08510 268 / 2e-86 fatty acyl-ACP thioesterases B (.1) Lus10025763 [exp] 283 / 2e-92 AT1G08510 270 / 1e-87 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 280 / 9e-91 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 280 / 2e-90 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G072700 [exp] 649 / 0 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 632 / 0 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 632 / 0 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 369 / 2e-125 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 360 / 3e-122 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 343 / 2e-115 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 341 / 1e-114 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 311 / 4e-103 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 307 / 2e-101 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 269 / 6e-87 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase CL0050 [flax] [poplar] PF12590 [flax] [poplar] Acyl-thio_N Acyl-ATP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10033072 pacid=23176988 polypeptide=Lus10033072 locus=Lus10033072.g ID=Lus10033072.BGIv1.0 annot-version=v1.0 ATGGTTCTTTCTATTGCTGCTTCTTCATTGTTTCCGGTTCCTCCCCAATCCGGGGATGCTAAGTCTGATAAGTCTGGTCGTGGGTCAGTCAATTTGGGCG GAGTCAGGTCAAAATCTGTTGCTTCTGGGGCATTGCAGGTGAAGGCAAATGCCCAAGCTCCACCCAAGATTAATGGGTCCTCAGTAAGCTATGCCACTCC TGCAGAAATAGTGAAGAAGAACTCTGACGTTCCTTCACAACCACCGCCAAGGACTTTTATTAATACGCTGCCTGATTGGAGTGTCCTCCTTGCTGCTATC ACAACCATTTTTTTGGCTGCTGAGAAGCAATGGACGACGCTAGACTGGAAGCCGAAGCGCCCTGACATGCTCATTGACCCTTTTGGTCTCGGGAGAATTG TTCAAGATGGTTTTGTGTTCAGGCAGAACTTTTCCATTAGGTCCTATGAGATTGGTGCGGATCGCTCAGCATCTATAGACACGTTGATGAATCATTTACA AGAAACAGCCCTCAATCATGTTAAAACTGCTGGTCTACTTGGTGATGGATTTGGTTCTACCCCAGAGATGAGCAAAAAGAACCTGATATGGGTTGTTACT CGGATGCAGGTTCTTGTTGATCGTTATCCAACATGGGGTGATGTTGTTCAGGTGGACACGTGGGTGACTGCGTCAGGGAAGAATGGTATGCGTCGTGATT GGCTGATTCGCGACTGTAGAACTGGTGAAGTTCTAACAAGGGCGTCCAGTGTATGGGTGATGATGAATAAACTTACACGGAGATTGTCAAAGATGCCTGA AGAGGTTAGAGCAGAGATTGAACCTTACTTTCTGCAGTCGGACCCTGTTGTCCCTGAAGATAGCAGGAAGCTCCTGAAACTGGATGACAACACTGCAGAT CGCATCCGCAAAGGATTAACTCCTAGGTGGAATGATTTGGATGTGAATCAGCATGTCAACAATGTGAAGTACATCAATTGGATCCTTGAGAGTGCTCCGC CAGAGATTCTGGAGAGTCATGAGCTGTACTCGATGACACTGGAGTACAGGAGGGAGTGTGGGAAGGACAGTGTCCTCCAGTCCCTGACCTCAGTCTCAGG GACGGGGATGGGTACAACCATAGGAAGTGCGGGCAAGATGGAATGCCAGCACTTGCTCCGCCTGGAGGAAGGTGGTGAAATTGTGAGGGGAAGAACAGAA TGGAGACCGAAATATAGCAACCCAGCAGCAGGTCAGATTCCTGCAAAACCAGCCTAG
AA sequence Show only first row Show all	>Lus10033072 pacid=23176988 polypeptide=Lus10033072 locus=Lus10033072.g ID=Lus10033072.BGIv1.0 annot-version=v1.0 MVLSIAASSLFPVPPQSGDAKSDKSGRGSVNLGGVRSKSVASGALQVKANAQAPPKINGSSVSYATPAEIVKKNSDVPSQPPPRTFINTLPDWSVLLAAI TTIFLAAEKQWTTLDWKPKRPDMLIDPFGLGRIVQDGFVFRQNFSIRSYEIGADRSASIDTLMNHLQETALNHVKTAGLLGDGFGSTPEMSKKNLIWVVT RMQVLVDRYPTWGDVVQVDTWVTASGKNGMRRDWLIRDCRTGEVLTRASSVWVMMNKLTRRLSKMPEEVRAEIEPYFLQSDPVVPEDSRKLLKLDDNTAD RIRKGLTPRWNDLDVNQHVNNVKYINWILESAPPEILESHELYSMTLEYRRECGKDSVLQSLTSVSGTGMGTTIGSAGKMECQHLLRLEEGGEIVRGRTE WRPKYSNPAAGQIPAKPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10033072 [exp]	0	1
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10000898 [exp]	1.4	0.9428
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10003719 [exp]	2.8	0.9342
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	5.7	0.8492
AT4G35320			unknown protein		Lus10001621 [exp]	10.0	0.8472
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	10.1	0.7962
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	10.6	0.8444
AT2G42760			unknown protein		Lus10019924 [exp]	12.0	0.8432
					Lus10020978 [exp]	14.1	0.8431
AT3G62650			unknown protein		Lus10010026 [exp]	14.5	0.8122
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	14.7	0.7775

Compare expression of checked genes

Lus10033072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.