Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32600 189 / 3e-56 RING/U-box superfamily protein (.1) AT1G80400 165 / 1e-47 RING/U-box superfamily protein (.1) AT3G61180 124 / 2e-32 RING/U-box superfamily protein (.1) AT4G11680 115 / 5e-29 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G26580 112 / 1e-28 RING/U-box superfamily protein (.1.2) AT5G55970 110 / 6e-28 RING/U-box superfamily protein (.1.2) AT2G01735 106 / 5e-26 RIE1 RING-finger protein for embryogenesis (.1) AT1G68070 103 / 5e-25 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G63170 99 / 4e-23 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 94 / 6e-22 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017750 [exp] 609 / 0 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10011475 [exp] 211 / 4e-65 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10023112 [exp] 194 / 2e-58 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10013144 [exp] 181 / 1e-53 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 173 / 6e-51 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10022567 [exp] 120 / 6e-31 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 104 / 4e-25 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 103 / 7e-25 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10021801 [exp] 90 / 4e-20 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034400 [exp] 215 / 8e-67 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 189 / 1e-56 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 115 / 2e-29 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 113 / 7e-29 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.002G155200 [exp] 112 / 4e-28 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 112 / 5e-28 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 111 / 6e-28 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G123300 [exp] 96 / 3e-22 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.010G106300 [exp] 90 / 4e-20 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G243200 [exp] 64 / 6e-12 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033075 pacid=23176969 polypeptide=Lus10033075 locus=Lus10033075.g ID=Lus10033075.BGIv1.0 annot-version=v1.0 ATGGAGCGGCCGCAGCTGGACGAAAGACATCAAAACCCCAGTCACGTTGTTCACATAACCGAACATTTGAATGGTTTGGAGGCAATCCATGGTGAAGATA TTAGGATGGCAAGTGCTGGTGAGGCACCTGCTCCTCAACCTTGTTCATCTTCTGGCAGTACATCCAACGCTGCCGCACATTCTTCAGTTTTCCCGTCTTA CTATAAAGTTCTGGTTTCCATCAAGCTATCGTATAATGCCATCCTCATTATTGCGTCCACCATTGTCTTGTTTCTGTCGAGACATGAGAGGCCGTCCAAT CCGTTGTTTGCTTGGGTTGTTGGTTATACAATCGGATGTGCTGCTAGTATTCCTGTGACTTTCAGACATTGTTTCCTTCCTCATCCTAGGCTCTGTAGAG TGATTGACCAAATTAAGCTGGCACTAGAATTGTTTTATGCATCTTGGTTCATGGTTGGCAATTACTGGGTCTTTACTGAAAGATCATCTAATGCGGCCCA CAGATTATACAGCCATTGCATCGCTCTTGTTGTCCTTAGCTACATGAAGTATGTTGGGCCATTCATTCTGCAGGCTTTGGTAGTTTGCTGCTGCAGAGGT TTCCTAAATCCAATTGTAGGAGCCCCTGTAGAAACCATAGATGCCCTTCCCATCTACAAATTCAAGTCGCTTAAAACTAGTGGTTCTTGTGGGGAACATG ATGGTGAAACTCATGATGGTGGAGTTGTGGGAGCAGGAACTGAGAGGGAACGTAGTCTTTCCGGTGATGATGCTGCTTGTTGCATTTGCTTGGCAACTTA TGGAGATGATGATGAACTAAAAGAGCTACCTTGTTCTCATCTGTTTCATGCAAGTTGCGTGGATATATGGCTTAAGCTTAAGGCATTTTGTCCACTCTGC AAATGCAGGATTGACAGGGCCATAGCTAATCTCCCGTCAGTGACGACCCCAGTTCAGTAA
AA sequence Show only first row Show all	>Lus10033075 pacid=23176969 polypeptide=Lus10033075 locus=Lus10033075.g ID=Lus10033075.BGIv1.0 annot-version=v1.0 MERPQLDERHQNPSHVVHITEHLNGLEAIHGEDIRMASAGEAPAPQPCSSSGSTSNAAAHSSVFPSYYKVLVSIKLSYNAILIIASTIVLFLSRHERPSN PLFAWVVGYTIGCAASIPVTFRHCFLPHPRLCRVIDQIKLALELFYASWFMVGNYWVFTERSSNAAHRLYSHCIALVVLSYMKYVGPFILQALVVCCCRG FLNPIVGAPVETIDALPIYKFKSLKTSGSCGEHDGETHDGGVVGAGTERERSLSGDDAACCICLATYGDDDELKELPCSHLFHASCVDIWLKLKAFCPLC KCRIDRAIANLPSVTTPVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	0	1
AT1G01770			unknown protein		Lus10014782 [exp]	2.6	0.8048
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	4.5	0.7946
AT4G36980			unknown protein		Lus10019346 [exp]	7.7	0.7854
AT4G27020			unknown protein		Lus10040054 [exp]	8.5	0.6878
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	11.1	0.7799
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	13.0	0.7338
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	14.1	0.7254
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	15.9	0.7661
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10025944 [exp]	18.3	0.7212
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	19.2	0.7478

Compare expression of checked genes

Lus10033075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.