Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44290 102 / 4e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G44300 99 / 1e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G55260 97 / 5e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G58550 86 / 5e-21 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G27950 70 / 6e-15 LTPG1 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1) AT1G73890 67 / 1e-13 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22600 65 / 3e-13 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G48130 62 / 5e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G03103 62 / 6e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G14815 55 / 1e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017749 [exp] 243 / 4e-82 AT2G44290 115 / 3e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10035975 [exp] 105 / 2e-26 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10042449 [exp] 98 / 4e-25 AT1G55260 160 / 3e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10026220 [exp] 81 / 7e-18 AT2G44300 131 / 6e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10006413 [exp] 75 / 9e-17 AT1G27950 137 / 5e-41 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1) Lus10037027 [exp] 72 / 7e-16 AT1G27950 147 / 3e-45 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1) Lus10015779 [exp] 71 / 4e-15 AT1G27950 144 / 8e-44 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1) Lus10042984 [exp] 67 / 1e-13 AT1G73890 81 / 3e-19 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032488 [exp] 65 / 5e-13 AT1G73890 84 / 2e-20 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232000 [exp] 107 / 4e-29 AT2G44300 179 / 4e-57 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G195700 [exp] 97 / 2e-25 AT2G44290 145 / 6e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G008500 [exp] 95 / 2e-24 AT2G44290 155 / 6e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G217000 [exp] 92 / 5e-23 AT1G55260 149 / 5e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.003G172400 [exp] 80 / 2e-18 AT1G27950 145 / 5e-44 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1) Potri.001G056200 [exp] 73 / 6e-16 AT1G27950 149 / 1e-45 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1) Potri.015G054000 [exp] 62 / 6e-12 AT1G73890 113 / 2e-31 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.015G053700 [exp] 62 / 6e-12 AT1G73890 113 / 2e-31 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.010G085400 [exp] 57 / 2e-10 AT3G22600 140 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G155100 [exp] 56 / 7e-10 AT3G22600 149 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10033076 pacid=23177009 polypeptide=Lus10033076 locus=Lus10033076.g ID=Lus10033076.BGIv1.0 annot-version=v1.0 ATGGCAAAAGACAGCAAAAAAGAGTTAGTTTGCGTCCTCATCGTGGCCTTCTTGGCAATAGCTGCAACAGCAACGTTGCAGGAAGACGAGGCAGAATGCG CAGAGCACCTTGCAGATCTTGCGGCTTGCATTCCATTTGTGAGTGGCACTGCCAAGAAGCCAACAACTGAGTGCTGTCAGGACACCAAGAAACTGAAAGC CACCGAGCCTAAGTGCTTGTGTGTCCTCATCATCGCGAGCACAGACCCTTCCATGGGTCTCCCCGTCAACACCACCCTTGCCCTTCAATTGCCTTCTGCC TGCAACATGGATGATGCCAAAGCCTCCAACTGTCCCTCTCTCTTGAACATATCTCCAGACTCCTCAGATGCAAAGGTCTTCAAAGAAGCAGGAATTTCAG ATTCTTCCACCAGTGGTTCAAGCACAACAACAGGTTCCCCACCAAATTCTGCTTCTACTTCATCAGGCTCATCTTCTTCTTCGTCTTCCCCAGCATCCGC CTCTTCCACTCCAACTGATTCAAAAGCTTCTCCAAACAGCAGTAATGGCCAAAAGATGAAGGATTTTGGAGCATGGATGTTGATGGCTCTTGCAGCTGGG ATGCTCTTCTGA
AA sequence Show only first row Show all	>Lus10033076 pacid=23177009 polypeptide=Lus10033076 locus=Lus10033076.g ID=Lus10033076.BGIv1.0 annot-version=v1.0 MAKDSKKELVCVLIVAFLAIAATATLQEDEAECAEHLADLAACIPFVSGTAKKPTTECCQDTKKLKATEPKCLCVLIIASTDPSMGLPVNTTLALQLPSA CNMDDAKASNCPSLLNISPDSSDAKVFKEAGISDSSTSGSSTTTGSPPNSASTSSGSSSSSSSPASASSTPTDSKASPNSSNGQKMKDFGAWMLMALAAG MLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	1.7	0.9484
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	2.4	0.9422
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	3.2	0.9242
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	3.3	0.9146
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	4.0	0.9450
					Lus10023010 [exp]	4.9	0.9218
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	5.5	0.9230
					Lus10007802 [exp]	6.0	0.9284
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	6.2	0.9031
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10011934 [exp]	7.3	0.8699

Compare expression of checked genes

Lus10033076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.