Lus10033077 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26890 1912 / 0 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017747 2377 / 0 AT2G26890 2231 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Lus10017748 863 / 0 AT2G26890 1451 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Lus10033078 153 / 1e-42 AT2G26890 120 / 2e-32 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G072600 2055 / 0 AT2G26890 3625 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Lus10033077 pacid=23177033 polypeptide=Lus10033077 locus=Lus10033077.g ID=Lus10033077.BGIv1.0 annot-version=v1.0
ATGGAGACTTCTAATCCCTCCAGTACCTCACCTTCTTCTGCTTCCCCTTCATCTTCAGTTCAAGAGGAGCCAGAGTACCTGGGTAGGTACCTCGTCGTCA
AGCACTCGTGGCGCGGACGTTACAAGCGAGTTCTATGCATTTCAGACGTTGCGATCGTTACTTTGGACCCTAATTCGCTAGCGGTGACGAACTCTTACGA
TGTGGCCACTGATTTCGAGGGTGCGTCCCCCATTGTCGGCAGGGATGAGAGTTCGACTGAGTTCAATTTGAGTGTGAGGACGGATGGGAAAGGGAAATTC
AAGGCGATGAAGTTTTCTTCCAAGTATAGAGCTAGTATATTGACTGAGCTGCATAGACTGAGGTGGAATAGGATTGGGCCAGTTGCGGAGTTCCCGGTGT
TGCATTTGCGAAGACGGAATGGAGAATGGGTACCGTATAAATTGAAAGTCACTTACATTGGGGTTGAATTGATTGATTCGAGATCTGGAGATCTTCGCTG
GTGCTTGGACTTTAGAGACATGAAATCCCCAGCAATCATAGTCCTTTCAGATGCTTATGGGAAGAAAAGTGATCATGGTGATTCTGTTCGTTGCCCTCTA
TACGGAAGAAAATCCAAAGCCTTCCAAGGTTCTTCGGGAACCACAAACTCTACAATTATCTCAAACCTGACTAAGACTGCCAAGGCAATGGTCGGAGTAT
CACTGGTGGTGAACAGCTCTCAATCACTGACTGTAATGGAGTATTTAAAGAGAAGAGAAAAAGAAGCAGTTGGAGCTGCGGAAACTCCTTGTGGCGATTG
GTCTGTAACCAGGTTGCGCTCTGCTGCTCATGGAACTCTTAACGTTCCTGGACTAACTTTGGGAGTCGGTCCTAAAGGTGGGCTTGGAGAGCATGGTGAT
GCCATCTCCCGTCAACTGATTCTGACTAGGGTTTCACTAGTTGAAAGGCGCCCGGAAAACTATGAAGCTGTTATTGTTCGTCCTTTATCGGCTGTGAATT
CACTTGTCCGATTTGCGGAGGAGCCTCAAATGTTTGCCATCGAGTTCAACGATGGGTGTCCAATCCAAGTTTATGCAAGCACATCACGAGATAATTTACT
GGCAGCTGTGCGTGACATGTTGCAAATAGAAGGTCAGTGTCCTGTTCCTATTTTGCCAAGGCTCACAATGCCCGGGCACCGTATTGACCCCCCTTGTGGG
AGAGTCCATTTACTACTAGGACCTCAACGACCTATTGCGGACTTGGAAGGTGCATCTATGCATTTGAAACATTTAGCATCAGCTGCTAAAGATGCTGTTA
CTGAAGGTGGTTCACTGCCCGGTTCAAGAGCTAAACTGTGGCGTAGAATAAGGGAGTTCAATGCCTGTATCCCGTATACTGGAGTTCCACCTAGCATTGA
AGTACCCGAGGTAACATTAATGGCCCTGATTACAATGCTTCCAGCGGCTCCAAATCTCCCCCCAGAGTCTCCTCCTTTGCCAGCTCCTTCTCCGAAAGCA
GCTGCAACAGTGATGGGTTTTGTTGCATGTTTACGTAGATTGTTGGCTTCAAAAGCTGCAGCTTCTCACGTGATGTCATTTCCAGCTGCTGTAGGAAGAA
TAATGGGTTTACTTAGGAATGGTTCTGAGGGTGTGGCCGCAGAAGCTGCAGGCCTTATTGCAGCTCTTATTGGGGGTGGTTCTGGGGATCCCGGGCTGTT
GGCAGATTCTAAGGGTGAACAGCATGCTACAACAATGCACACAAAGTCCGTCTTGTTTGCTCACAGTGGTTATGTCACTATAATTGTTAACAGATTGAAA
CCTATGTCTGTGTCACCTTTATTATCAATGGCCATTGTGGAAGTTCTTGAGGTGATGATATGTGAGCCGCATGGTGAAACTACACAATATACGGTTTTTG
TTGAATTGTTACGTCTGGTAGCTGGTTTGCGACGTCGTTTATTTGCACTTTTTGGACATCCTGCTGAAAGTGTAAGGGAAACAGTTGCTGTCATTATGCG
TACGATTGCAGAAGAGGATGCAATCGCGGCAGAGTTCATGCGGGATGCTGCTCTGCGTGATGGTGCTTTTTTGAGTCATTTGTTGCATGCATTTTATCTC
CCTGCTGGTGAAAGGCGGGAAGTTAGTCGACAGCTTGTAGCTCTATGGGCAGATTCATATCAACCTGCTTTGGATCTATTGTCTAGAACCCTGCCTCCAG
GGCTCGTTGCTTATTTACACACACGGACTGAGGGTTCTTCAAATGGGGATTCAAATCAAGAGGAATCATTGATTAGTAGACGTCAAAAACGTTTGCTTCA
ACAAAGAAAACTCCGTAATGTGGGAGGTATTACATCTCAGGAGAATCCCTCAACTTCTGTTAATAACTACGAGGTCGGTGATCTTGGCAGAGAATCAATG
TCTACTGCCTTTAGAGTGCCAGATAACCATCCAACATCTGTTCTAGATTCAAATTATGGCCAATCACCTACTGCTGTTGTTGATAGTTTAGCCAGCAAGG
TTCCACAAATGAGGGTCTCACAAACTGATAATCCCTATGGCATTGCTACAGTTTATATGCCATCAACCAATACAAGCGAGGCATCTGAAACAAATGTTTC
AAATTCTGCAAACTATGATGCACAGGTTGCAGGATTACAAAGTGGTGTTCCAGCTCCTGCCCAGGTTGTTGTGGAGAATACACCAGTGGGTTCCGGTCGG
CTACTTTGCAATTGGCATGAATTTTGGAAGGCTTTTAGTCTTGACCATAATCGTGCCGACTTAATTTGGAATGAACGCACTAGACAAGAACTTAGGGAGA
CATTGAAGGATGAAGTTCATAAACTAGACATGGAGAAGGAACGCACCGAAGATATTGTTCCTGGAGGTGCAACTGGAGAGTCTGATGCTGGACATGATGG
TGTGCCACAGATATCATGGAATTATCCTGAGTTTTGTGTTCGTTATCCTAGCTTATCAAAAGAAGTTTGTGTTGGTCAATATTATTTGCGGCTACTGCTT
GACAGTAGTAGCAATGGGAGAGCACATGATTTTCCATTGCGCGATCCTGTAGCTTTCTTTAGGGCACTCTACCATCGATTTCTATGTGATGCTGATACAG
GGCTTACGGTGGATGGTGCCGTTCCTGATGAACTAGGTGCATCTGATGATTGGTGCGATATGGGAAGATTAGATGGTTTTGGGGGAGGTGGAGCTTCATC
AGTCAGAGAGCTTTGTGCTAGGGCAATGGCTATCGTCTATGAACAACACTACACTGTGATTGGGCCTTTTGAGGGCACTTCACATACAACAGTTCTTTTA
GACCGGACAGATGATAGGTCACTAAGACATCGGCTTCTCCTTTTATTGAAGGTTCTGATGAAGAATTTATCCAACGTGGAGGCTTGTGTTTTGGTTGGAG
GATGTGTATTGGCTGTTGACCTTCTTACTGTTGCTCATGAAGCTTCAGAAAGGACTGCAATCCCTTTGCAATCGAACTTGTTAGCTGCTACGGCTTTCAT
GGAACCACTTAAAGAGTGGATGTACTTGGATAAAGATGGTGCTGAAGTCGGTCCTGTAGAAAAGGATGCTATCAGGCGACTTTGGTCGAAAAAGGCTATT
GACTGGACAACAAAATGCTGGGCTTCTGGGATGGGTGAGTGGAAGAGACTGCGGGATATTCGTGAACTTCGATGGACCATGGCTATTCGTGTTCCTGTCC
TCACACCATCTCAGGTAGGGGATACAGCATTGACTATATTACACAACATGGTGTCCGCACATTCAGATTTAGATGATGCTGGAGAGATTGTTACCCCAAC
CCCCAGGGTAAAGTGGATTTTGTCTAGTCCCCGTTGCCTTCCTCATATCGCACAGGTCATGCTGTCTGGAGAACCCAGCATAGTGGAGGCTGCTGCAGCA
TTGCTGAAGGCTGTTGTAACAAGAAATCCAAAGGCCATGATACGTCTTTATAGTACTGGTGCATTTTACTTCGCTCTTGCCTATCCTGGATCGAATCTAC
TTTCAATTGCACATTTGTTTGCTGTGACTCATGTCCATCAAGCATTCCATGGCGGTGAAGAGGCTGCAGTTTCTTCTTCACTACCTCTTGCAAAACGCAG
TGTATTGGGTGGGCTACTACCAGAGTCTCTGCTCTATGTGCTGGAGCGGAGTGGACCTGCTGCATTTGCTGCAGCCATGGTTTCTGATTCTGATTCTCCA
GAGATTATCTGGACACACAAAATGCGAGCAGAAAATTTAATTCGTCAGGTCTTGCAGCATCTTGGTGATTTCCCTCAGAAGCTATCTCAGCACTGTCATT
CTTTATATGATTATGCTCCCATGCCTCCTTTTGAGAGCGCTAGAGCTGAAATACTTGAAGTTTCTGGTCTTATTGAGGACATAGTGCACTGCAATGAACT
TGAACTAATGCCTGAAGCTGGCGATGCTGCACTCCAGACAATTGCCAATTTGTCTGTATCATCCGATTTGCAGAATGCATTGTTAAAAGCTGGTGTGCTT
TGGTTTCTTTTGCCTTTGTTGCTCCAATATGACTCGACCGCTGAGGAATCGGGTAACTCCGAATCACATGGTGTTGGTTCAAGCGTTCAGATAGCCAAAA
ATATGCTTGCTGTCCGTGCATCTCAGGCCTTGTCGCGGCTTAGTGGGTTGTGTAATGATGAGAATTTAGCACCTTATAATACTTCAGCAGTTGATGCCCT
CAGGGCGCTGCTAACTCCTAAACTTGCTAGCATGCTCAGAGATCAAATGCCAAAAGACTTATTGTCAAAATTGAACTCAAACTTGGAATCTCCAGAGATA
ATCTGGAACTCTGCCACTCGAGGAGAGTTGCTAAAATTTGTAGATCAGCAACGTGCTAGTGCAGGCCCTGATGGTTCCTATGACCTGAAAGATTCACATT
CCTTTTTCTATGACTCATTGTCTAAAGAACTCTTTATTGGCAATGTTTACTTAAGGGTCTACAATGATCAGCCAGACTCTGACATCAGTGAGCCAGAAGT
GTTCTGTGTTGCCCTAGTTGATTTCATATTATGTCTTGTGAGCAGTCAAACTAGTGGAGTTTCTGATGTACAGAAGGAACTTAGTAGTCCAAGCAGTTCA
ACCTCAGAGACATCTGAGGTTCACAACCATCCTGCTGATACTAGGCTGTTACCTCTGTTTGAATGTTTCTCTGTGCCGATAGCATCAGAAAGCAACATTC
CCCAACTTTGCCTGATTGTGCTTTCCCTTTTGACTGCGTATGCTCCTTGCTTGGAAGCTATGGTTGCTGACGGATCTAGTCTTCTCCTCTTATTGCAAAT
GCTTCATTCTTCTCCGGGCTGCCGGGAGGGTGTGCTCCATGTTCTTTCTGCTTTGGCCAGCACTGCAGAGCTCGCTTGGGCTGCTGCCAAGCATGGTGGG
GTGGTCTACATTCTTGAACTTCTTTTGCCTGTTCAAAAAGAAATACCCTTACAGCAGAGAGCAGCAGCAGCTTCCTTACTTGCAAAGCTTGTTGGGCAGC
CAATGCATGGTCCCAGAGTTTCTATAACACTTGCAAGGGATGGACTGGGTGAGGCTGTTGTATCTGCACTTGAACAGACAACAGAGACACCAGAGCTTGT
GTGGACACCAGCAATGGCAGCATCTTTGTCTGCCCAAATTGCAACCATGGCGTCAGACTTGTACCGTGAACAGATGAAAGGTCGTGTAGTTGATTGGGAT
GTACCTGAGCAAACCTCTGGGCACCAAGAAATGAAAGATGAACCACAGGTTGGTGGCATATATGTCAGGTTGTTCTTAAAAGATCCCAAATTCCCTCTAA
GAAACCCTAAGAGATTCCTGGAAGGGCTACTTGATCAATACTTGTCATCCATTGCTGCCACTCATTACGAGACTCAAGTTGTTGACCCGGAGCTTCCTTT
GCTTCTCTCCGCTGCTTTAGTTTCTCTGTTGCGAGTATACCCTGCACTTGCAGATCACGTTGGTTACCTTGGATATGTGCCCAAACTAGTTGCTGCAGTA
GCTTATGAGGGAAGAAGGGAGACAATGGCTTCTGATGAGATGAACAATGACAGCTATGCAGACACGGGAAGTGAATTTGACGAGGCATCCACCCCACCTG
CTCAAACTCCTCAGGAGCGTGTGCGCCTTAGTTGCTTGCGCGTCTTACATCAGCTTGCATCAAGTACAATATGTGCTGAAGCTATGGCGGCAACTAGTGC
TGGATCACCACAGGTTGTTCCACTTCTTATGAAAGCTATAGGATGGCAAGGTGGAAGTATACTAGCTCTTGAGACCTTGAAACGTGTTGTTGTTGCTGGA
AATCGAGCCCGGGATGCACTGGTTGCCCAAGGACTCAAGGTTGGTCTGGTGGAAGTACTTCTGGGAATTCTTGATTGGAGAGCTGGTGGACGAAATGGAC
TTCGCTCTCAGATGAAGTGGAATGAGTCTGAAGCATCTATCGGCACAGTTCTTGCAGTTGAGATAAAGAATGGCCTAACGGTTATATTGCAGGTTTTGCA
TGCATTTGCAACTGAAGGAGCTCACTGTAGCAAAGTCCGGGATTTACTAGATTCGTCTGAGATATGGCATGCCTACAAAGACCAGAAACATGATCTCTTC
CTTCCTTCGAGTGCTCAGTCTTCTGCAGCTGGAGTTGCAGGTCTGATAGAGAGTTCGTCGTCGAGATTAACATATGCCATTATGGGTCCCCAAGCAAGCT
CTCAAGGGAGCGGCAGACCACCAGCACCCAGCAATCTGTTGTAG
AA sequence
>Lus10033077 pacid=23177033 polypeptide=Lus10033077 locus=Lus10033077.g ID=Lus10033077.BGIv1.0 annot-version=v1.0
METSNPSSTSPSSASPSSSVQEEPEYLGRYLVVKHSWRGRYKRVLCISDVAIVTLDPNSLAVTNSYDVATDFEGASPIVGRDESSTEFNLSVRTDGKGKF
KAMKFSSKYRASILTELHRLRWNRIGPVAEFPVLHLRRRNGEWVPYKLKVTYIGVELIDSRSGDLRWCLDFRDMKSPAIIVLSDAYGKKSDHGDSVRCPL
YGRKSKAFQGSSGTTNSTIISNLTKTAKAMVGVSLVVNSSQSLTVMEYLKRREKEAVGAAETPCGDWSVTRLRSAAHGTLNVPGLTLGVGPKGGLGEHGD
AISRQLILTRVSLVERRPENYEAVIVRPLSAVNSLVRFAEEPQMFAIEFNDGCPIQVYASTSRDNLLAAVRDMLQIEGQCPVPILPRLTMPGHRIDPPCG
RVHLLLGPQRPIADLEGASMHLKHLASAAKDAVTEGGSLPGSRAKLWRRIREFNACIPYTGVPPSIEVPEVTLMALITMLPAAPNLPPESPPLPAPSPKA
AATVMGFVACLRRLLASKAAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAALIGGGSGDPGLLADSKGEQHATTMHTKSVLFAHSGYVTIIVNRLK
PMSVSPLLSMAIVEVLEVMICEPHGETTQYTVFVELLRLVAGLRRRLFALFGHPAESVRETVAVIMRTIAEEDAIAAEFMRDAALRDGAFLSHLLHAFYL
PAGERREVSRQLVALWADSYQPALDLLSRTLPPGLVAYLHTRTEGSSNGDSNQEESLISRRQKRLLQQRKLRNVGGITSQENPSTSVNNYEVGDLGRESM
STAFRVPDNHPTSVLDSNYGQSPTAVVDSLASKVPQMRVSQTDNPYGIATVYMPSTNTSEASETNVSNSANYDAQVAGLQSGVPAPAQVVVENTPVGSGR
LLCNWHEFWKAFSLDHNRADLIWNERTRQELRETLKDEVHKLDMEKERTEDIVPGGATGESDAGHDGVPQISWNYPEFCVRYPSLSKEVCVGQYYLRLLL
DSSSNGRAHDFPLRDPVAFFRALYHRFLCDADTGLTVDGAVPDELGASDDWCDMGRLDGFGGGGASSVRELCARAMAIVYEQHYTVIGPFEGTSHTTVLL
DRTDDRSLRHRLLLLLKVLMKNLSNVEACVLVGGCVLAVDLLTVAHEASERTAIPLQSNLLAATAFMEPLKEWMYLDKDGAEVGPVEKDAIRRLWSKKAI
DWTTKCWASGMGEWKRLRDIRELRWTMAIRVPVLTPSQVGDTALTILHNMVSAHSDLDDAGEIVTPTPRVKWILSSPRCLPHIAQVMLSGEPSIVEAAAA
LLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLLSIAHLFAVTHVHQAFHGGEEAAVSSSLPLAKRSVLGGLLPESLLYVLERSGPAAFAAAMVSDSDSP
EIIWTHKMRAENLIRQVLQHLGDFPQKLSQHCHSLYDYAPMPPFESARAEILEVSGLIEDIVHCNELELMPEAGDAALQTIANLSVSSDLQNALLKAGVL
WFLLPLLLQYDSTAEESGNSESHGVGSSVQIAKNMLAVRASQALSRLSGLCNDENLAPYNTSAVDALRALLTPKLASMLRDQMPKDLLSKLNSNLESPEI
IWNSATRGELLKFVDQQRASAGPDGSYDLKDSHSFFYDSLSKELFIGNVYLRVYNDQPDSDISEPEVFCVALVDFILCLVSSQTSGVSDVQKELSSPSSS
TSETSEVHNHPADTRLLPLFECFSVPIASESNIPQLCLIVLSLLTAYAPCLEAMVADGSSLLLLLQMLHSSPGCREGVLHVLSALASTAELAWAAAKHGG
VVYILELLLPVQKEIPLQQRAAAASLLAKLVGQPMHGPRVSITLARDGLGEAVVSALEQTTETPELVWTPAMAASLSAQIATMASDLYREQMKGRVVDWD
VPEQTSGHQEMKDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYETQVVDPELPLLLSAALVSLLRVYPALADHVGYLGYVPKLVAAV
AYEGRRETMASDEMNNDSYADTGSEFDEASTPPAQTPQERVRLSCLRVLHQLASSTICAEAMAATSAGSPQVVPLLMKAIGWQGGSILALETLKRVVVAG
NRARDALVAQGLKVGLVEVLLGILDWRAGGRNGLRSQMKWNESEASIGTVLAVEIKNGLTVILQVLHAFATEGAHCSKVRDLLDSSEIWHAYKDQKHDLF
LPSSAQSSAAGVAGLIESSSSRLTYAIMGPQASSQGSGRPPAPSNLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Lus10033077 0 1
AT1G58230 binding (.1) Lus10028167 2.2 0.9780
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Lus10032589 2.8 0.9743
AT1G48090 calcium-dependent lipid-bindin... Lus10017107 3.0 0.9740
AT2G07360 SH3 domain-containing protein ... Lus10008548 3.2 0.9589
AT5G16280 Tetratricopeptide repeat (TPR)... Lus10021264 3.9 0.9467
AT4G17140 pleckstrin homology (PH) domai... Lus10011036 4.9 0.9567
AT1G48090 calcium-dependent lipid-bindin... Lus10037833 5.9 0.9640
AT3G13530 MAPKKK7, MAP3KE... MAP3K EPSILON PROTEIN KINASE, ... Lus10010209 6.0 0.9449
AT1G21630 Calcium-binding EF hand family... Lus10035983 6.6 0.9420
AT1G58230 binding (.1) Lus10042867 6.9 0.9704

Lus10033077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.