Plant FIBer expression Database

Lus10033078 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26890 120 / 3e-32 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033077
[exp]
155 / 2e-44 AT2G26890 2123 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Lus10017747
[exp]
153 / 6e-44 AT2G26890 2231 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G072600
[exp]
125 / 3e-34 AT2G26890 3625 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Lus10033078 pacid=23176973 polypeptide=Lus10033078 locus=Lus10033078.g ID=Lus10033078.BGIv1.0 annot-version=v1.0
ATGAAGTTTTCTTCCAAATGTAGAGCTAGTATATTGACTGAGCTGCATAAACTGAGGTGGAATAGGATTGGGCCAGTTGCGGAGTTCCCGGCATTGCATT
TGCGACAACGGAATGGAGAATGGGTACCGTATCATACTAAGACTGCCAAGGGAATGGTCGGAGTATCACTGGTGGTGAACAGCTCTCAGCCACTGGCTGT
AATGGAAAAAAGAGCAGTTGGAGCTCCGGAAACTCCTTGTGGCGATTGGTCTGCAACCAGGTTGCACTCTGCTACTCATGGAACTCTTAACGTTCCTGGA
CTAACTTTGGGAGTCGATCCTAAAGGTGGGCTTGGAAAGCATGGTGATGCTATCTCCGGTCAACTGATTCGGACTAGGGTATCACTTGTTGAAAGGCGCC
CGGAAAACTATGAAGTAAGTGCATGA
AA sequence
>Lus10033078 pacid=23176973 polypeptide=Lus10033078 locus=Lus10033078.g ID=Lus10033078.BGIv1.0 annot-version=v1.0
MKFSSKCRASILTELHKLRWNRIGPVAEFPALHLRQRNGEWVPYHTKTAKGMVGVSLVVNSSQPLAVMEKRAVGAPETPCGDWSATRLHSATHGTLNVPG
LTLGVDPKGGLGKHGDAISGQLIRTRVSLVERRPENYEVSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Lus10033078
[exp]
0 1
AT1G74320 Protein kinase superfamily pro... Lus10008675
[exp]
1.0 0.8740
AT2G25680 MOT1 molybdate transporter 1 (.1) Lus10019046
[exp]
3.5 0.7265
AT1G55570 SKS12 SKU5 similar 12 (.1) Lus10021863
[exp]
8.6 0.6566
AT3G48360 ATBT2, BT2 BTB and TAZ domain protein 2 (... Lus10018087
[exp]
16.3 0.7687
AT3G56960 PIP5K4 phosphatidyl inositol monophos... Lus10003819
[exp]
22.0 0.7281
AT1G03390 HXXXD-type acyl-transferase fa... Lus10017744
[exp]
22.4 0.6845
Lus10020192
[exp]
24.1 0.6867
AT1G01050 ATPPA1 pyrophosphorylase 1 (.1) Lus10005139
[exp]
40.0 0.6778
AT1G17420 ATLOX3, LOX3 Arabidopsis thaliana lipoxygen... Lus10015666
[exp]
40.1 0.7039
AT4G17740 Peptidase S41 family protein (... Lus10023704
[exp]
45.1 0.6342

Lus10033078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.