Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24350 304 / 5e-102 ATSYP32, SYP32 syntaxin of plants 32 (.1.2) AT5G05760 197 / 2e-60 ATSYP31, ATSED5, SYP31 T-SNARE SED 5, syntaxin of plants 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017741 [exp] 406 / 2e-142 AT3G24350 410 / 2e-144 syntaxin of plants 32 (.1.2) Lus10028277 [exp] 247 / 1e-79 AT5G05760 417 / 7e-147 T-SNARE SED 5, syntaxin of plants 31 (.1) Lus10040213 [exp] 243 / 4e-78 AT5G05760 418 / 4e-147 T-SNARE SED 5, syntaxin of plants 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157000 [exp] 373 / 3e-129 AT3G24350 294 / 3e-98 syntaxin of plants 32 (.1.2) Potri.018G072400 [exp] 369 / 8e-128 AT3G24350 332 / 3e-113 syntaxin of plants 32 (.1.2) Potri.010G191100 [exp] 222 / 6e-70 AT5G05760 395 / 8e-138 T-SNARE SED 5, syntaxin of plants 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10033080 pacid=23177004 polypeptide=Lus10033080 locus=Lus10033080.g ID=Lus10033080.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCATTAGGTAAAACGTCCTATCGTGATCGGACGCAGGAGTTCTTGGGCATCGCAGACAGGCTGAAGAAGTTAACCTCGTCGGTGAACAATG CGGGTGTTAGTAGCAGCAGCAGTAGCACGAGACCTGACGCCGCTCGATCTGCGGTTTCCATTCAGTCTGAATTTAGCAAACGAGCTTCAAAGATTGGGTT TGGAATTCATCAGACGTCTCAGAAGCTATCCAAGCTTGCCAAATTGGCCAAGAGAACGTCAGTATTTGATGACCCAACGATGGAGATCCAGGAACTGACT GCTCTTATAAAGCAAGATATCACTGCGCTCAACTCAGCCGTTGTAGATCTCCAGCTCGTATGCAACTCTCAGAATGAGAGTGGAAACATTTCTACTGACA CCACAACCCATTCGACCACAGTTGTAGATAACCTAAAAAATCGTTTGATGAGTGCAACAAAGGAGTTTAAAGAAGTCTTAACCATGCGAACAGAGAATTT GAAGGTTCACGAGAACCGGAGGCAGTTGTTTTCTGCAAATTCGTCGAAAGATGCTGTCAATCCTTTTGTCCGTCAACGTCCACTAGCTTCTAGATCTACA GCCAATTCTACATCAACAGCTCCTCCACCTCCTTGGGCTAATGGTTCTGCAACCTCATCCCAGTTATTTCCTAGTAGGAAGTCAGATGTGGAGTCTCAGC CACTGTTACAGCAACAGCAGCAGCAGAGTCAACAGCAACAGCAACAGCAACAGCAGATGGTTCCGCTCCAAGATAGTTACATGCAGAGTAGAGCTGAGGC TCTACATAATGTGGAATCAACAATTCATGAACTCGGCAATATATTTACACAGCTAGCAACGATGGTGTCTCAGCAAGGAGAGCTTGCTATAAGGATTGAC GAGAACATGGACGATACACTGTCGAATGTTGAAGGTGCGCAGGGGCAGCTGGTTAGGTATCTAAACAGCATATCGTCCAACAGGTGGCTGATGATAAAGA TATTCTTTGTACTAGTTGTTTTCCTCATGATTTTCTTGTTCTTCGTTGCCTGA
AA sequence Show only first row Show all	>Lus10033080 pacid=23177004 polypeptide=Lus10033080 locus=Lus10033080.g ID=Lus10033080.BGIv1.0 annot-version=v1.0 MSAALGKTSYRDRTQEFLGIADRLKKLTSSVNNAGVSSSSSSTRPDAARSAVSIQSEFSKRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELT ALIKQDITALNSAVVDLQLVCNSQNESGNISTDTTTHSTTVVDNLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFSANSSKDAVNPFVRQRPLASRST ANSTSTAPPPPWANGSATSSQLFPSRKSDVESQPLLQQQQQQSQQQQQQQQQMVPLQDSYMQSRAEALHNVESTIHELGNIFTQLATMVSQQGELAIRID ENMDDTLSNVEGAQGQLVRYLNSISSNRWLMIKIFFVLVVFLMIFLFFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	0	1
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	2.4	0.8563
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	3.6	0.8590
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	7.2	0.8089
AT2G26680			unknown protein		Lus10043275 [exp]	8.3	0.8530
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	9.5	0.8327
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	9.6	0.7961
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	11.0	0.8283
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	11.0	0.8443
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10034299 [exp]	11.7	0.7821
AT3G49720			unknown protein		Lus10039648 [exp]	12.0	0.8249

Compare expression of checked genes

Lus10033080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.