Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24330 230 / 3e-71 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 172 / 4e-49 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 169 / 5e-48 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 165 / 1e-46 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 162 / 9e-46 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 162 / 9e-46 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 156 / 3e-43 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 151 / 1e-41 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 145 / 2e-39 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 145 / 3e-39 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017740 [exp] 368 / 2e-124 AT3G24330 540 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 174 / 7e-50 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 168 / 1e-47 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 167 / 4e-47 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10043075 [exp] 161 / 4e-45 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 159 / 1e-44 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 159 / 3e-44 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 159 / 3e-44 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 158 / 5e-44 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G072300 [exp] 221 / 1e-67 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 171 / 5e-49 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G059700 [exp] 170 / 2e-48 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G080600 [exp] 166 / 7e-47 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 164 / 2e-46 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 164 / 3e-46 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.007G078900 [exp] 162 / 2e-45 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 159 / 3e-44 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 155 / 1e-42 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 149 / 1e-40 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10033082 pacid=23177043 polypeptide=Lus10033082 locus=Lus10033082.g ID=Lus10033082.BGIv1.0 annot-version=v1.0 ATGATATGGAAGGATCCACCCCACTACTTTACTTCTTCTTCCTGTTGCCTCTTGACGGTACCTTGGCGGCGGAAGGAGGAGTCAAGAGGCAGAGGGAGTA ACGTCGGTGTGAACTGGGGCACTATGTCCACTCACCAGCTCCCTCCTGAAAGAGTCGTCCAAATGCTCACGGATAACAACTTCGCCAAGCTCAAGCTCTT CGGGTTCGACGACGTAATCATGACTGCTCTTCTCGACACTCACATCGCGGTTATGCTGGCTATCCCCAATTACATGCTCCGTACCATGGCTGAGGATTTC GATTCCGCCTCTGCCTGGGTTGATCAGAATGTCACCGATTGGTGCTTCCATGGCGGCGTCAATGCCAAGTTGAGTTTCATCTTTACCTACAGCACAGCAT CAATCATCGCCATTAACGCCAAGAGATTCAACCAAGGGCTACTCAAACATGTTGTGGATGGCAACAGGACACCAGCAAGGCAAGCTGGTAGTGATGATGA TAAGATCGAAGTGTACCTCTTCAGCCTGATTGATGAGAATGCCAATAGTGTGGCTCCTGGTAAGTTTGAGAGGCACCGGGGGATATTTGAGTACGATGGG AGGCCCAAGTATGAGCTTGACTTAAAAGGGTATGGAGCAGATGTAGGGCTGGTTGCAGTTGATGGAGTATTGTACATGGAGAGGAAATGGTGTGTTTTGG ACCCAAATGCTGTTACTGATCTAACTGAGCTGTCCAAGAGTATGGATTACGCATGTGGATTGGCTGATTGTACTGCTCTTGAATATGGAGGTTCCTGCAA CCATCCGAGTGTTACTGGGAATCCTTCTTATGCGTTCAATATGTACTACCAGGTACAGGGCCAGAAAGATTGGAGCTGTGATTTCTCTGGGTTAGGTATG GTTACTTATGAGAATCCTTCTGATGAGAAATGCTTGTTCCCTGTCATGATTGCAAATGGTGCAAGTTCAGTTCAGGGAGGCATCAAGTTTCTGTTGCGGA GAATTTGGTTGGTTGTGTTCATGATCCAGATCATGATGTTCCTTCCCATACATGTGAATAAGATTGGATGGTGA
AA sequence Show only first row Show all	>Lus10033082 pacid=23177043 polypeptide=Lus10033082 locus=Lus10033082.g ID=Lus10033082.BGIv1.0 annot-version=v1.0 MIWKDPPHYFTSSSCCLLTVPWRRKEESRGRGSNVGVNWGTMSTHQLPPERVVQMLTDNNFAKLKLFGFDDVIMTALLDTHIAVMLAIPNYMLRTMAEDF DSASAWVDQNVTDWCFHGGVNAKLSFIFTYSTASIIAINAKRFNQGLLKHVVDGNRTPARQAGSDDDKIEVYLFSLIDENANSVAPGKFERHRGIFEYDG RPKYELDLKGYGADVGLVAVDGVLYMERKWCVLDPNAVTDLTELSKSMDYACGLADCTALEYGGSCNHPSVTGNPSYAFNMYYQVQGQKDWSCDFSGLGM VTYENPSDEKCLFPVMIANGASSVQGGIKFLLRRIWLVVFMIQIMMFLPIHVNKIGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	0	1
					Lus10015658 [exp]	2.8	0.9079
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	3.9	0.8972
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	4.2	0.8651
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	4.2	0.8981
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	6.3	0.8424
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	6.6	0.8803
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	7.1	0.8417
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	7.7	0.8694
					Lus10039390 [exp]	9.2	0.7927
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	9.4	0.8394

Compare expression of checked genes

Lus10033082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.