Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32610 61 / 2e-10 copper ion binding (.1) AT2G25670 52 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017738 [exp] 160 / 2e-46 AT2G25670 67 / 2e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246300 [exp] 64 / 3e-11 AT4G32610 81 / 5e-17 copper ion binding (.1) Potri.018G034800 [exp] 54 / 3e-08 AT2G25670 112 / 1e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033084 pacid=23177005 polypeptide=Lus10033084 locus=Lus10033084.g ID=Lus10033084.BGIv1.0 annot-version=v1.0 ATGGTCGGCGGTGGCGGGAGGACGAACGAGCAGGTGGTTCTTAACAATACCAACGTGTTTGCTGCGCTCGACACCTTAAGGAAGAAGAAGAAGAGTTCAT CCTCCAACTCTTCCGCCGCTAAGGGGCGAGACGGCTCTTCTAGATCGAAATCTACCAAGGATGATAAGGAGCCCGTTAATGAGGTCTTCTGGTCTACACG TCTGAAGAACGTACCTTGGGGCGATGTCGAGGAGGATGAAGATTATTACTCCACCACTGCCCCTCCCGCTAGGGAAGCTGCTCTTGATGCCAAGCCGGCG AAGGAGGTCGTCGAGGAAAGTGAAAGTGACGAAGAAGATGATGATAATGTGGAAGATGTGGAGGAAGAAGGTGATCATGAGCCAGAAGCACCTGCTGGGG TGGAGCCTGTTAAGAAGCAACCAGAGCCTTCTTTGGCTCCCAAGGATACAGAAAGGCAACTGTCAAAGAAGGAACTGAAGAAAAAAGGACTTGAAGAACT TGATGCGGTTCTTGCAGAGCTGGGATTAGCTAAACAGGAGTCAGGTGGTCAGGAGGCCTCTGATGGAGAGAAGAAAGCAGACAACAATGGACAAGAAAAG AAGGAGAATGCTGCTGCAGGAGAGAGCAAGAATGCCAAAAAGAAAAAGAAGAAGGAGAAGATGTCAAAGGAAGTGAATGATTCTGAGAACCAGTCTCAAA GTGCAGCCGCGGTTGGAGATGCTGGAGGCAACAGCACTGCTGAGACTGAGAAGTCGGACGATGCAGCTAATGTTGATGTGGAGCGTTTGAAGAAAGTGGC TGGCAAGAAGAAGAAATCAAGTAAAGAAGTTGATGCCGCTGCCAAGGCTGCTGCTAGTGAGGCTGCTGCCAGGCGTGCAAAGGTTGCTGCCGCTGCAAAG AAGAAGGAGAAGGCTCACTACAATCAGCAGCCCGTGCGGTAA
AA sequence Show only first row Show all	>Lus10033084 pacid=23177005 polypeptide=Lus10033084 locus=Lus10033084.g ID=Lus10033084.BGIv1.0 annot-version=v1.0 MVGGGGRTNEQVVLNNTNVFAALDTLRKKKKSSSSNSSAAKGRDGSSRSKSTKDDKEPVNEVFWSTRLKNVPWGDVEEDEDYYSTTAPPAREAALDAKPA KEVVEESESDEEDDDNVEDVEEEGDHEPEAPAGVEPVKKQPEPSLAPKDTERQLSKKELKKKGLEELDAVLAELGLAKQESGGQEASDGEKKADNNGQEK KENAAAGESKNAKKKKKKEKMSKEVNDSENQSQSAAAVGDAGGNSTAETEKSDDAANVDVERLKKVAGKKKKSSKEVDAAAKAAASEAAARRAKVAAAAK KKEKAHYNQQPVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25670			unknown protein		Lus10033084 [exp]	0	1
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	3.2	0.8291
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	4.6	0.8411
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10030555 [exp]	8.1	0.8240
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	13.4	0.8355
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	16.6	0.8024
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10041953 [exp]	17.0	0.8318
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	18.4	0.8384
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	19.8	0.8356
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029219 [exp]	22.6	0.8340
AT5G57860			Ubiquitin-like superfamily pro...		Lus10035816 [exp]	23.6	0.8162

Compare expression of checked genes

Lus10033084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.