Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13400 560 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G63290 87 / 7e-19 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017737 [exp] 723 / 0 AT4G13400 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004080 [exp] 90 / 1e-19 AT3G63290 374 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10014705 [exp] 65 / 1e-11 AT3G63290 275 / 1e-91 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076700 [exp] 581 / 0 AT4G13400 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G049300 [exp] 89 / 2e-19 AT3G63290 387 / 4e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10033085 pacid=23176990 polypeptide=Lus10033085 locus=Lus10033085.g ID=Lus10033085.BGIv1.0 annot-version=v1.0 ATGACGTGCTCGTCCGCGGATTCTTCTTTTCCTACTCTCAGGACTGTCACCATACCTTACTCGGAACTCAAGGAGAAGAATATAGATTTATCCAATAAGA TAGAGGAAGGTTTCGGACCAAACGGGTTGGGAATTCTGTCAATTACAGATGTCCCAGGATTTTCTTCATTGCGTCAAAATCTTTTGCATCTTTCTCAAAG ACTAGCCAGTCTTCCCGAGGAAATAAAGAAGGAACTTGAAGATCCAAGTACAAGGTACAACTTTGGATGGAGTCATGGAAAAGAGAAGCTTGAATCAGGA AAGCCTGATGTATTAAAAGGCTCTTATTATGCAAATCCGATGCTCGATGTGCCCACAACTGATGAACATCTGATACAGCGGTATCCCTCGTATTGTGGAT CTAATATATGGCCCAATAGTGCACTGCCTGAACTGGAAGTTGCTTTCAAAGCACTTGGGAAGCTCATCCTTGATGTTGGATTAATGGTAGCTTATCATTG TGATCGATACGTTTCAAAAGGAATGAACCCTGATGAAGATGGTGACCTCAAAAAGATACTTAGCTGCTCTCGCTGTCACAAAGGCCGGTTACTTTACTAC TTTCCTGCTCATCAAAATGATGGTTCAAAAGATACCGACTCCATGTCCTCATGGTGTGGTTGGCATACAGATCACGGTTCTCTGACAGGTCTGACCTGTG CTCTGTTTAAGAGAGACGGTGTAGAAATACCTTGCCCTGATAGTGCTGCTGGTCTTTATATTAGAACACGAACAGATCAAGTTGTGAAAGTTGTATATGG AGAAGACGAAATAGCATATCAAGTTGGAGAAACCACTGAAATTCTCTCGGGAGGCTATCTATGTGCAACACCTCACTGTGTCCGGGCACCTAAAGGAGTG GTGGCTTCTAATGTTGACCGATCAACATTTGCTTTATTCATGCAGCCTGACTGGGATCAAAAGCTGAATTTTCCCGAGGATGTGCGACTTCACGAAGAGC TGAAGCTGGGGAACACCAGTCTTACCTTTGGAGAGTATACAGAGAGGCTATTGGAGAAGTACTACCACACTAGATCTTAG
AA sequence Show only first row Show all	>Lus10033085 pacid=23176990 polypeptide=Lus10033085 locus=Lus10033085.g ID=Lus10033085.BGIv1.0 annot-version=v1.0 MTCSSADSSFPTLRTVTIPYSELKEKNIDLSNKIEEGFGPNGLGILSITDVPGFSSLRQNLLHLSQRLASLPEEIKKELEDPSTRYNFGWSHGKEKLESG KPDVLKGSYYANPMLDVPTTDEHLIQRYPSYCGSNIWPNSALPELEVAFKALGKLILDVGLMVAYHCDRYVSKGMNPDEDGDLKKILSCSRCHKGRLLYY FPAHQNDGSKDTDSMSSWCGWHTDHGSLTGLTCALFKRDGVEIPCPDSAAGLYIRTRTDQVVKVVYGEDEIAYQVGETTEILSGGYLCATPHCVRAPKGV VASNVDRSTFALFMQPDWDQKLNFPEDVRLHEELKLGNTSLTFGEYTERLLEKYYHTRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	0	1
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	2.8	0.9695
					Lus10008051 [exp]	3.7	0.9569
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	4.2	0.9633
AT2G39855			unknown protein		Lus10004678 [exp]	5.1	0.9686
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	5.9	0.9645
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	7.5	0.9649
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	7.7	0.9581
AT5G26770			unknown protein		Lus10001515 [exp]	8.7	0.9399
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	8.8	0.9572
AT5G06130			chaperone protein dnaJ-related...		Lus10021316 [exp]	9.3	0.9481

Compare expression of checked genes

Lus10033085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.