Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19460 389 / 5e-134 ATNUDT20 nudix hydrolase homolog 20 (.1) AT5G19470 354 / 8e-121 ATNUDT24 nudix hydrolase homolog 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017736 [exp] 624 / 0 AT5G19460 421 / 2e-146 nudix hydrolase homolog 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157700 [exp] 414 / 3e-144 AT5G19460 426 / 3e-149 nudix hydrolase homolog 20 (.1) Potri.006G157800 [exp] 406 / 4e-141 AT5G19460 419 / 3e-146 nudix hydrolase homolog 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10033086 pacid=23177029 polypeptide=Lus10033086 locus=Lus10033086.g ID=Lus10033086.BGIv1.0 annot-version=v1.0 ATGGCTTACGGCGTTATATTTTCAGTTCCGATTCCCAGATTCCCTCCCCGCATCCATCCAGCTCGATCCCTCCCCTTTTTCCATGGTGGCCGTTATTTCT CACTGCCTGCCTACCAGATTCCGCTTCTCGTGCTATCCATCACTTCGCCCGACGACAACTTTCCAACGACGGATCATCATCCAGACCCCGCCAGCCGGAA GAACGGCATTTGCTCTCCGGGCTTTAACTTCCCAATCCAATTCCTCAGCTCCCTCTCAGTTTCAGCTTCAGAGAGCAGCTGCAGCTTCACTTGGGATGAC GCCCTCCGAATCTCTCAACCCAATTATAACAATACCCCTTGCGGCGATTCCTTCGATCTCTCTGGATTCTTTGATAAAATCAACTTCTGCAATCGCGGCT CCGAACTGCGAAGCGAATTCGTTCCCTTCGTGATCGAGGAGAAAACAGTTGGATACATCCATAACGGATTTGTTGAACATTTGAAGCGATTCGAGGAAGT GTTCGTGATCCACAAAAGCATTTCCCATGGTGGCCGATTTGGGTATTACGTGACTTTACACGACAAGCTAGTGACGGCTGAAGAGAGGACTGCAGCCGTT GGGGAAGTCATCAAATGTTTGGGAGAGGATGAACAGCTAATTCCAGGTATACGAAATGAGCTGTACCCGGTGACTTCATCTTTTGGTGGGCAAGTCTATT TCTCCTTGGAGCGTGCTGCAGCTCCTTATTTTGGGATAAAGGCCTATGGCATACATATGAATGGGTTTGTGGAAACGGATGATGAGAAATTGCTATGGGT AGCAAAGAGAAGTCAAGGGAAACCTACTTTCCCAGGGATGCTTGATCATATAGTTGCTGGAGGACTGCCTCACGGGATGTCTTGTCAAGAGAATGTTATT AAGGAATGTGAAGAAGAAGCTGGCATACCTCAGTCCATCTCCTCCAAGGCTCTGCCGGTTGGCGTTGTTTCCTACGTAGACATCGATGGTGATAGATTCA AGAGAGATGTACTCTTTTGCTACGACTTGGAGCTGCCTGAAAGTTTTGTACCAGAGAATCAAGATGGAGAAGTTGAGGACTTCAGGTTGATACCTGTGCG TAATGTAAGTAACATAGTAAGGAGGACCCAATTTTACAAGCCGAACTGCTCCCTAGTCGTCATCGATTTCCTATTTCGACATGGGTAA
AA sequence Show only first row Show all	>Lus10033086 pacid=23177029 polypeptide=Lus10033086 locus=Lus10033086.g ID=Lus10033086.BGIv1.0 annot-version=v1.0 MAYGVIFSVPIPRFPPRIHPARSLPFFHGGRYFSLPAYQIPLLVLSITSPDDNFPTTDHHPDPASRKNGICSPGFNFPIQFLSSLSVSASESSCSFTWDD ALRISQPNYNNTPCGDSFDLSGFFDKINFCNRGSELRSEFVPFVIEEKTVGYIHNGFVEHLKRFEEVFVIHKSISHGGRFGYYVTLHDKLVTAEERTAAV GEVIKCLGEDEQLIPGIRNELYPVTSSFGGQVYFSLERAAAPYFGIKAYGIHMNGFVETDDEKLLWVAKRSQGKPTFPGMLDHIVAGGLPHGMSCQENVI KECEEEAGIPQSISSKALPVGVVSYVDIDGDRFKRDVLFCYDLELPESFVPENQDGEVEDFRLIPVRNVSNIVRRTQFYKPNCSLVVIDFLFRHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10033086 [exp]	0	1
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031190 [exp]	5.7	0.7356
AT2G39580			unknown protein		Lus10029459 [exp]	11.1	0.6853
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	21.6	0.7034
					Lus10022247 [exp]	24.9	0.5981
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	30.9	0.6707
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Lus10016172 [exp]	37.5	0.6465
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	44.3	0.6587
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10009122 [exp]	48.7	0.6439
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	62.3	0.6169
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	63.1	0.6186

Compare expression of checked genes

Lus10033086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.