Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24420 274 / 3e-92 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 226 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1) AT4G37470 213 / 4e-68 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 57 / 5e-09 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 44 / 8e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G80280 42 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017735 [exp] 508 / 0 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 226 / 3e-73 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 225 / 5e-73 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 220 / 5e-71 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10014859 [exp] 214 / 2e-68 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 202 / 8e-64 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 201 / 1e-63 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 169 / 2e-51 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10007737 [exp] 131 / 3e-36 AT3G03990 227 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155500 [exp] 352 / 4e-123 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 251 / 2e-83 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 223 / 3e-72 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G145000 [exp] 220 / 5e-71 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 216 / 2e-69 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 214 / 1e-68 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 49 / 3e-06 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G235200 [exp] 42 / 0.0004 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G127200 [exp] 41 / 0.0005 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10033087 pacid=23177000 polypeptide=Lus10033087 locus=Lus10033087.g ID=Lus10033087.BGIv1.0 annot-version=v1.0 ATGGTGATGCAACAAACCAGCCTGAAAAAGGCCTTGAACGCCAGAACCATGATGGGGTCGCCCAACAATACTTGGGGCGAGACCATAGTTCTAGCGCACG GCTATGGTGGGGATCAGTCGGCCTGGGACGACATCCTCCCAGGGCTTACAGGTCACTGTCGCCGGGTGGTGACTTTTGACTGGTGCTTCTCGGGCGCCGT CAAGGAACCAAACACCAACTTGTTCGACCAGGGCAAGTACTCGACTTACGAGGCATTTGCGGACGACCTGATCGGGCTGATGGAGGAGATGGAGCTGGAA TCGGTGGTGTTCGTGGGCCACTCCATGTCCGGAATGATCGGATGCATTGCTTCCATTAAACGCCCGGACCTCTTCAAGCGTTTAGTCCTCGTCGGCGCTT CTCCCAGATACATGAACGCGGACGATTACGAAGGAGGTTTCGACCGCTCCCACATCGAAGACCTAATGACCAACATAGAAACCAACTTCTCCAACTGGGC ACCGGCCTTCGCCGCCATGGTCGTCGGCGGCGGCGGCGACGACCCTTCCGCCGTCCACAAATTCGCCAACTCATTGAAGAGAATGAAACCCGAGGTGGCT CTCTCCGTCGCCAAAACAGTCTTCTACGGAGACTACAGGGAAGTGCTCTGTAAAGTCACTACTCCGACCACCATCGTCCAGACCAGGCACGACGCCGCCG TCCCGAGCTCGGTGGCCTACTACATGCAGGAGACGATCAAGGGGAAATCAACGGTGGAGATCATTGACACGGATGGTCACTTCCCGCATCTGACGGCCCG TGATCAGCTGCTTGGTTTGCTTGCTGGACTCCTCGGGTTGGCGGCTTGA
AA sequence Show only first row Show all	>Lus10033087 pacid=23177000 polypeptide=Lus10033087 locus=Lus10033087.g ID=Lus10033087.BGIv1.0 annot-version=v1.0 MVMQQTSLKKALNARTMMGSPNNTWGETIVLAHGYGGDQSAWDDILPGLTGHCRRVVTFDWCFSGAVKEPNTNLFDQGKYSTYEAFADDLIGLMEEMELE SVVFVGHSMSGMIGCIASIKRPDLFKRLVLVGASPRYMNADDYEGGFDRSHIEDLMTNIETNFSNWAPAFAAMVVGGGGDDPSAVHKFANSLKRMKPEVA LSVAKTVFYGDYREVLCKVTTPTTIVQTRHDAAVPSSVAYYMQETIKGKSTVEIIDTDGHFPHLTARDQLLGLLAGLLGLAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	0	1
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10041762 [exp]	3.0	0.9295
					Lus10024084 [exp]	3.3	0.9574
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	3.3	0.9281
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	3.5	0.9357
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	4.7	0.9449
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	8.0	0.9299
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	8.1	0.9439
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	8.4	0.9285
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10011003 [exp]	9.3	0.9092
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	11.7	0.8841

Compare expression of checked genes

Lus10033087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.