Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19590 188 / 2e-62 Protein of unknown function, DUF538 (.1) AT4G02360 86 / 7e-22 Protein of unknown function, DUF538 (.1) AT4G02370 85 / 2e-21 Protein of unknown function, DUF538 (.1) AT1G02816 85 / 3e-21 Protein of unknown function, DUF538 (.1) AT1G02813 83 / 8e-21 Protein of unknown function, DUF538 (.1) AT1G55265 78 / 1e-18 Protein of unknown function, DUF538 (.1) AT5G19860 69 / 3e-15 Protein of unknown function, DUF538 (.1) AT3G07460 64 / 3e-13 Protein of unknown function, DUF538 (.1.2) AT3G07470 55 / 6e-10 Protein of unknown function, DUF538 (.1) AT1G61667 54 / 9e-10 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017733 [exp] 246 / 5e-85 AT5G19590 189 / 8e-63 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 96 / 2e-25 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10009854 [exp] 85 / 3e-21 AT1G02816 184 / 3e-60 Protein of unknown function, DUF538 (.1) Lus10010297 [exp] 85 / 3e-21 AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1) Lus10039182 [exp] 73 / 2e-16 AT1G55265 135 / 1e-40 Protein of unknown function, DUF538 (.1) Lus10013756 [exp] 72 / 2e-16 AT1G55265 137 / 2e-41 Protein of unknown function, DUF538 (.1) Lus10039187 [exp] 71 / 7e-16 AT5G19860 190 / 4e-62 Protein of unknown function, DUF538 (.1) Lus10013752 [exp] 71 / 8e-16 AT5G19860 194 / 1e-63 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 64 / 4e-13 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158952 [exp] 225 / 6e-77 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 96 / 1e-25 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 94 / 1e-24 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 92 / 6e-24 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G127600 [exp] 84 / 1e-20 AT1G02816 206 / 4e-68 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 83 / 1e-20 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 82 / 3e-20 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 81 / 7e-20 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.002G203400 [exp] 81 / 9e-20 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 69 / 5e-15 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10033088 pacid=23176974 polypeptide=Lus10033088 locus=Lus10033088.g ID=Lus10033088.BGIv1.0 annot-version=v1.0 ATGGCCGCAGAACTTGTAGCTCTCATCTCTCTCCTCCTGACCCTCCCACTCTCCTCGCAGTCCGACCTGAACACCATCCCCATCCCACCGACGCCAGCCC ACGCCGAGCTCACCAATTACGGTTTCCCGATCGGACTCCTCCCTGCCTCCGTCCAGGGATACTCTCTCAACCAGACCTCCGGTGAATTCTCCATCGACTT CGGATCCTCCTGCAAGATCACTCTCCCGCCCGACAACTACCTGGCCACCTACTCCAAAACCGTCAAGGGCAAGATCGTCAAGGGCCGGATTGCCGAGCTC GACGGGATCCGTGTTCGGGCATTTTTCCAGTGGTGGTCCATCACCGGAATCAAGTCCAGCGACGGAGACTTGGTCTTCGAGGTCGGTATGGTCACCGCCA AGTATCCATCCAAGAACTTTGATGAGAGCCCCCAGTGTGAGGGCAAGCGCTCGGCTTCTTAA
AA sequence Show only first row Show all	>Lus10033088 pacid=23176974 polypeptide=Lus10033088 locus=Lus10033088.g ID=Lus10033088.BGIv1.0 annot-version=v1.0 MAAELVALISLLLTLPLSSQSDLNTIPIPPTPAHAELTNYGFPIGLLPASVQGYSLNQTSGEFSIDFGSSCKITLPPDNYLATYSKTVKGKIVKGRIAEL DGIRVRAFFQWWSITGIKSSDGDLVFEVGMVTAKYPSKNFDESPQCEGKRSAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19590			Protein of unknown function, D...		Lus10033088 [exp]	0	1
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	2.8	0.7903
AT3G17950			unknown protein		Lus10006150 [exp]	2.8	0.8267
AT1G60870		MEE9	maternal effect embryo arrest ...		Lus10022977 [exp]	5.2	0.7699
AT1G55365			unknown protein		Lus10010316 [exp]	6.3	0.7651
AT3G02300			Regulator of chromosome conden...		Lus10030712 [exp]	11.2	0.7767
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10040681 [exp]	14.7	0.7744
AT4G39810			Polynucleotidyl transferase, r...		Lus10016807 [exp]	15.2	0.7871
					Lus10038255 [exp]	15.9	0.7643
AT1G71080			RNA polymerase II transcriptio...		Lus10004071 [exp]	16.2	0.7261
AT5G19090			Heavy metal transport/detoxifi...		Lus10029942 [exp]	17.1	0.7055

Compare expression of checked genes

Lus10033088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.