Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032678 [exp] 159 / 8e-45 ND / Lus10030062 [exp] 154 / 2e-43 ND / Lus10033071 [exp] 129 / 1e-32 ND 39 / 0.005 Lus10043173 [exp] 114 / 1e-29 ND / Lus10019381 [exp] 99 / 7e-24 ND / Lus10016935 [exp] 98 / 8e-24 ND / Lus10043174 [exp] 101 / 1e-23 ND / Lus10032677 [exp] 99 / 2e-23 ND / Lus10017075 [exp] 96 / 3e-23 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033089 pacid=23177037 polypeptide=Lus10033089 locus=Lus10033089.g ID=Lus10033089.BGIv1.0 annot-version=v1.0 ATGGTGGTTTTCGAGAATTTCAAGCATTCCATTGACGCATTGCTCAGACATTTTCATCATCAATGGCAGGCGGCTCAACATCTAGTGCTTCGTCAACAAC CAGGTCGGCATCCTCAGTTGAGTAATGATACTCAATCTCTGGTTAGCAATCGGATAGTTCAAAATGCATGGACCATTCATCTTGACGCCGCTGTTCACAT TACTGATTCATTACCACAATTTGGAGCAATTGGTCTGGTGGTTTACAGGGCCTGTGGATCCTTGGTTTCGGGGATACGACAAGTATTCCCTCACTTCTCT GACCCTTTACTTCTGGAGATCCTTGCAATCCGACAAGCCCTGTTTGTTGTGCATGTTCGACATATGGAAAAGATAATAATCTACTCAGACTGTACATACG TTGTTCGCTTGATCAATTTTACATTCTCAGATATTCGTGTGGGTCAACTACTTTCGAAATGTCAAGGCCTCCTACGAGTTCTCCCTTTAGTCTATCTTGT TCATTTTTTCGGTCAGGAAACAAAACCAATGGCTAGCAAGAAACAACGGGTACCTGACAACGCAAAAGGGAAGAGCGCACAAAAGAAAATCAAGAAGTGG CAGTTCCGGTGCAAGACCAAACGAGCACTAGAGGTGTACGACATGATATTGGAGCACCCGAACAAAAACAAGATTAGGCATCTGCTGATGGATGCCAACT TCCATGGCTTGCTAAATGTCAAGTTAACCTTGATCAACAAACATATCACTAATTTCCTAATTAGTTGCTACCGGAGTTTGTATCAGGACTTCAAGTTCCC AAACAGCGCAACCATGGATATACACCCTTCTGATATTGGTAGGGTTTACGGCCTGATGTACTATGGAGAACCTGTTGATGTTGAATCAAATTTGTCTTTG GACGATAGGAAACAGTTTAAGCAGGAACATGGAATAGCTGCAAATTCATACGGTAACGTCTCAATCAAGCCACTGCAAGACCGACTGAAGGAAGTCACGA ATTCAGAAATTTTGTACAAGCTTTACATTCGACAAAGCTTAGGATCCATGATGGTTCCTAAAAACTCTTGGCGAAACGTCCCTGAAACCTCTCAAGATGG TGAAAAACATCCCAATGATGCTCTGTTGAATTGGGGTCAGGGCCTCTCTGAAAATTCTGCCAGACAAATGCTGGAATCCCTCCAAAAAGTAGTTGCTGAA GAGGTGAGGAAGTGGACAGGCCGCATATGCAAAGGGAAGGACGAATTGGGTATTTGGGAGACGCGGTTGGATGTAGTGGCAAACCTTCTTGAAATCCAAA AGGACGACGTTGAATTGAGGGATCGTGCAAACAAGCAAAGGCAATTTTTTGGAGAGGTGAAGGACCCAAGAAAAGAAGGCAATAGTCGAAACAAAGTAGA GGAGGAAGAAGACCCTGAGAACAAGATCGTGACCTATATCTTATCCGCTCCCGATAATTGTTTTGCTGACCTTTACACGAAGCTGCACACATTTAAGCTA AAGACAATGCAGTATGGTCACGATATGTGCACAACTGTTATGGACTCCAATGCCCAGCAACTAAACCGTGAAGAGTTTGACCCTGCCTTTAGTTACTTGA AATATGTATTCTTCCCTGTACATGGAGGATGTTTTAAGCACTTCTATGTCTTTGGGTTGGATCTAGTGCAGATAGTGAAGTTCATCCTCAATAGCATATT CAGCCTCAATGACTTTGAAGTTAAGTGTTACTACAAACCTACCGGGACACAGCTGATGTCGTACGCAAGGCTAGTGCTTCTCAATGTAGCTGACTTGGAC ATAGGTGACTTCCCGTGA
AA sequence Show only first row Show all	>Lus10033089 pacid=23177037 polypeptide=Lus10033089 locus=Lus10033089.g ID=Lus10033089.BGIv1.0 annot-version=v1.0 MVVFENFKHSIDALLRHFHHQWQAAQHLVLRQQPGRHPQLSNDTQSLVSNRIVQNAWTIHLDAAVHITDSLPQFGAIGLVVYRACGSLVSGIRQVFPHFS DPLLLEILAIRQALFVVHVRHMEKIIIYSDCTYVVRLINFTFSDIRVGQLLSKCQGLLRVLPLVYLVHFFGQETKPMASKKQRVPDNAKGKSAQKKIKKW QFRCKTKRALEVYDMILEHPNKNKIRHLLMDANFHGLLNVKLTLINKHITNFLISCYRSLYQDFKFPNSATMDIHPSDIGRVYGLMYYGEPVDVESNLSL DDRKQFKQEHGIAANSYGNVSIKPLQDRLKEVTNSEILYKLYIRQSLGSMMVPKNSWRNVPETSQDGEKHPNDALLNWGQGLSENSARQMLESLQKVVAE EVRKWTGRICKGKDELGIWETRLDVVANLLEIQKDDVELRDRANKQRQFFGEVKDPRKEGNSRNKVEEEEDPENKIVTYILSAPDNCFADLYTKLHTFKL KTMQYGHDMCTTVMDSNAQQLNREEFDPAFSYLKYVFFPVHGGCFKHFYVFGLDLVQIVKFILNSIFSLNDFEVKCYYKPTGTQLMSYARLVLLNVADLD IGDFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033089 [exp]	0	1
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	4.8	1.0000
					Lus10011061 [exp]	7.1	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	7.5	1.0000
					Lus10022145 [exp]	8.1	1.0000
					Lus10011759 [exp]	8.3	1.0000
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10012855 [exp]	8.5	1.0000
					Lus10014487 [exp]	9.2	1.0000
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	9.8	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	11.2	1.0000
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10020662 [exp]	13.2	1.0000

Compare expression of checked genes

Lus10033089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.