Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13350 319 / 7e-101 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT4G32630 106 / 8e-24 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT1G08680 100 / 6e-22 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017729 [exp] 1065 / 0 AT4G13350 457 / 3e-153 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10022113 [exp] 142 / 5e-35 AT4G32630 249 / 2e-72 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Lus10020306 [exp] 116 / 4e-27 AT1G08680 373 / 7e-122 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10005686 [exp] 114 / 3e-26 AT1G08680 446 / 9e-149 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076200 [exp] 446 / 9e-148 AT4G13350 371 / 3e-119 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Potri.018G035000 [exp] 204 / 2e-56 AT4G32630 210 / 2e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.006G246100 [exp] 202 / 7e-56 AT4G32630 224 / 1e-63 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.013G068300 [exp] 137 / 7e-34 AT1G08680 499 / 2e-168 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033090 pacid=23176996 polypeptide=Lus10033090 locus=Lus10033090.g ID=Lus10033090.BGIv1.0 annot-version=v1.0 ATGGCTAAATTTACCTCCCAAGAAGTTGCTGCACTTCAGGAAGGCGGAAACAAGCGCGCAAGAGAAGTTCTTCTAAAAGACTGGGATCCTCAGCGTAATT CTACACCTGACAGCAGTAATGTGGATAGACTTCGGGACTTTATTAAACATGTGTATGTTTATAAAATATACACGGGTGATAAGAATTTTGGCAAGCCCCC AAATATGAAGACGGGTGAAAAAGAAGATCTATTTGAGAATAGAAGAACCGACACATTCCAAGGAGGCTCTCGGAGTCCGCCATATGAGGATGTCTATGAA CGACGTTTCAATCAAACGTCTAGTCCTGGTGGAAGAAGCGATGATAAAAATAGCAGATATGATGAGAGGCGAAGCCCTGGATATGTTCAAGAAGGTCGAC AGTACAATGATTACAAGAAAAGTCCAGCTCGGCCTGAGATTATCAATGATTGGCGTCGGGAGGATAGATTTGGAAATGGGAGGAAAGGAGAGGACCGTAG AGTATCCGATGGAGATTCAACACCAGGAGGCAGGTCACCTGATCGGCCAAATGATATTGGAGCATATAGCCCCCCTGTGGTTCGGCCTGTTCGAGAAATT CTGGGAGATAACGTAGTGCCTCTTCGTATAAGTGAACCACCAAAAGCGAATGCAGTAAGGCCTGCTGATGGTTTTCTGGGAACACAGAGGACTGCATCTT CAAGCAGCCTGGGCTCTACAAATGAGAACCCAACGGAAGTGAAAGTTGAACCAGTTGCAAGCTTAATCGATTTTGATTCTGACCCTGTACCCGCTGTTGC TTTGGCTGTCCCGCAAGCACATCCAGCAACTGCAACTCAGCCTGCTGCAGAGACTGTAGCAACCAGCAATGACAATAACTGGGCCTCTTTTGATTTTGCG CCTGCTGTTAAAGCTTCTCAACCTCCTGCAATTACAGCTAATCCATTGGATTCTGTTTTGTCCCAGTTGTCAGCTACACCATCAGCATCCGGTTCCACTC AAAGTATTCTGAATGGTTCTGGTACTTTACCAGCACCAGTTGCATCTGCATTTCCCTATAATCCTAATATCTCTGCTCCTGGAGGACAGCAATGGGCGCA GACGCAGCATCAACAAGCTTCCTTTTTCCCTAATTCTGGTGTTCAATCCACCAATCAACAAGTTTCAGCCCCTAGCAATCAGCCTTGGAATTCTTCTGTA CCCCCGAATGTGCAAGCAGCTTTGGGTACGAATCCTGGGGCAGGAACTATCTCAGGTCCTGCAACAACACAACCTTCAACAGTCACTGGAAGAAACGAAC TACCTGCTGATCTTTTTACCGCAACATATCCTTCTTTTGCTACAATGAATCAGGGGTGGCAAACAGGCCAACCCAACGGTATGATGTATTATCCTGTGCA GTATGCTAATGTGCCAGCTCCTATGCAATATAGCAGTGTTGCTGCGCCTACACCTGCATTTATCCAGCACTCAAAATCAGCCAATCCATTTGATGTGAAT GAGCCAACTCCAGCTCCTGTCCAGCATTTTCCAAACATGTCATCTTTGCAAAGTGCTTTGCCGAATATATCGCCACATTCAGGAATACAACGTGCTTCAA GTCTTGGTAACCCTGCACAAGCATGGATGCCAAACCAGCCACCATCGTATCCATCAGGGTTGCATCCTCAGCTACAATCTTACGCAACTACCGCTCCCCC AAGGCCAACTACGTCTCAAGTACCGAGTCACATGCCATTGCCAGGGCACCAAGGATTAGCAAGCTTCAGCAATGATGGAGGCACCTTTGGTGCCATACAT TTGGACCAGTCGTTAACTGATGGATTCTCCGCCCCTGCTACTCTTCAGTCGTTCCCTTCGATGGGTGCAAACCCTTTCGGATGA
AA sequence Show only first row Show all	>Lus10033090 pacid=23176996 polypeptide=Lus10033090 locus=Lus10033090.g ID=Lus10033090.BGIv1.0 annot-version=v1.0 MAKFTSQEVAALQEGGNKRAREVLLKDWDPQRNSTPDSSNVDRLRDFIKHVYVYKIYTGDKNFGKPPNMKTGEKEDLFENRRTDTFQGGSRSPPYEDVYE RRFNQTSSPGGRSDDKNSRYDERRSPGYVQEGRQYNDYKKSPARPEIINDWRREDRFGNGRKGEDRRVSDGDSTPGGRSPDRPNDIGAYSPPVVRPVREI LGDNVVPLRISEPPKANAVRPADGFLGTQRTASSSSLGSTNENPTEVKVEPVASLIDFDSDPVPAVALAVPQAHPATATQPAAETVATSNDNNWASFDFA PAVKASQPPAITANPLDSVLSQLSATPSASGSTQSILNGSGTLPAPVASAFPYNPNISAPGGQQWAQTQHQQASFFPNSGVQSTNQQVSAPSNQPWNSSV PPNVQAALGTNPGAGTISGPATTQPSTVTGRNELPADLFTATYPSFATMNQGWQTGQPNGMMYYPVQYANVPAPMQYSSVAAPTPAFIQHSKSANPFDVN EPTPAPVQHFPNMSSLQSALPNISPHSGIQRASSLGNPAQAWMPNQPPSYPSGLHPQLQSYATTAPPRPTTSQVPSHMPLPGHQGLASFSNDGGTFGAIH LDQSLTDGFSAPATLQSFPSMGANPFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	2.0	0.8908
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	4.0	0.8489
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	4.1	0.8932
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	4.2	0.8796
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	5.5	0.8810
AT3G15160			unknown protein		Lus10040027 [exp]	7.7	0.8593
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	7.9	0.8762
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	8.9	0.8638
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	10.4	0.8741
AT5G22780			Adaptor protein complex AP-2, ...		Lus10020522 [exp]	10.6	0.8815

Compare expression of checked genes

Lus10033090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.