Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24460 562 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 542 / 0 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT2G33205 320 / 1e-106 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G06170 158 / 3e-44 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 135 / 6e-36 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017728 [exp] 720 / 0 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 288 / 6e-94 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 272 / 2e-88 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10034023 [exp] 173 / 1e-49 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 169 / 3e-48 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10026111 [exp] 136 / 4e-36 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10008709 [exp] 135 / 1e-35 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076000 [exp] 610 / 0 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G174200 [exp] 337 / 3e-113 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.008G201900 [exp] 164 / 2e-46 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G186500 [exp] 148 / 2e-40 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 135 / 2e-35 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [flax] [poplar] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Lus10033091 pacid=23177016 polypeptide=Lus10033091 locus=Lus10033091.g ID=Lus10033091.BGIv1.0 annot-version=v1.0 ATGGAGGAGAATGCAGCTGCCGGATGCGGAAGCAGCAGAATAGAGAGGAACAATGCGGTGTTAAAAGACCCGTCGTGGTTCGGTCAGTTCAGAAACGGGT CGAACCCGTGGATGGCTAGATACCTGTACGCTCTCATATTCCTATCAGCGAATCTACTAGCCTGGGCAGCTCGTGACTATGGGCGAGCGGCATTGACGGA GATGTACAGGCTGAAAGTGTGTGATGGGAAATCAGAGTGTTTGGGAGCAGAAGGGGTGCTGAGGGTGAGCTTGGGTTGTTTCTTGTTCTTCATCCTCATG TTTGCATTGACGGTTGGGACATCGAAGCTTGAGGATCCTCGGGATGCATGGCATTCTGGTTGGTGGACTGCTAAATTAGCAATGTGGGTTGGACTCACAA TGCTCTCTTTCCTTCTCCCTTCCACCCTTGTCAAGATCTATGGGGAGATTGCTCATTTTGGTGCTGGGGTGTTTCTACTAATTCAGCTGGTGAGTGTGAT CAGCTTCATAACTTGGGTCAACGATTGCTGCCTGTCTGAGAAAAACGCTGAAAGATGCCATATTCATGTGATGCTAGTGGCGACAGCTTCGTATGTGTTA TGTTTGTTTGGGATGATAATGATGTACATTTGGTACACGCCTGATCCATCTTGCCTCCTCAACATTTTCTTCATTACATGGACTTTAGTGCTTCTCCAAC TCATGACCAGCGTCTCTCTTCACCCTAAAGATGCTGATGGTGATGCTGATGCTGAACAGATAAATGCTGGTTTCTTGGCACCAGGACTGATGGGGCTTTA TGTTGTGTTCCTTTGCTGTGAGCCGGCAGGGGAGAGTTGTAACAGGAAGGCAGAGGCTTCCAAGAGAACAGATTGGCTCACCATCATAAGCTTTGTTATT GGACTACTTGCAATAGTCATTGCTACATTTTCGACAGGAATCGACTCGAAATGCTTCCAGATGAGGAAAAGAGAGAGTCAGCAAGGTGATGAAGAAGATC ATGTACCGTACGGATACGGATTCTTTCACTTTGTGTTTGCGACGGGAGCTATGTACTTCGCCATGCTGTTAATTGGCTGGAACACCCACCACAAGATTAA GAAGTGGACAATTGATGTGGGATGGACAAGTGCCTGGGTCAGAGTCGTTAATGAATGGCTGGCAGTTTGTGTATACGGTAGGTAA
AA sequence Show only first row Show all	>Lus10033091 pacid=23177016 polypeptide=Lus10033091 locus=Lus10033091.g ID=Lus10033091.BGIv1.0 annot-version=v1.0 MEENAAAGCGSSRIERNNAVLKDPSWFGQFRNGSNPWMARYLYALIFLSANLLAWAARDYGRAALTEMYRLKVCDGKSECLGAEGVLRVSLGCFLFFILM FALTVGTSKLEDPRDAWHSGWWTAKLAMWVGLTMLSFLLPSTLVKIYGEIAHFGAGVFLLIQLVSVISFITWVNDCCLSEKNAERCHIHVMLVATASYVL CLFGMIMMYIWYTPDPSCLLNIFFITWTLVLLQLMTSVSLHPKDADGDADAEQINAGFLAPGLMGLYVVFLCCEPAGESCNRKAEASKRTDWLTIISFVI GLLAIVIATFSTGIDSKCFQMRKRESQQGDEEDHVPYGYGFFHFVFATGAMYFAMLLIGWNTHHKIKKWTIDVGWTSAWVRVVNEWLAVCVYGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24460			Serinc-domain containing serin...		Lus10033091 [exp]	0	1
AT1G31130			unknown protein		Lus10028643 [exp]	7.2	0.8877
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10017164 [exp]	8.6	0.7963
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10042223 [exp]	12.4	0.8521
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	12.4	0.8479
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10030978 [exp]	13.6	0.8248
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	18.0	0.8495
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10008590 [exp]	20.2	0.8392
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	23.4	0.8551
AT3G14170			Plant protein of unknown funct...		Lus10008137 [exp]	23.5	0.8293
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	23.6	0.8433

Compare expression of checked genes

Lus10033091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.