Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52360 1469 / 0 Coatomer, beta' subunit (.1.2) AT3G15980 1457 / 0 Coatomer, beta' subunit (.1.2.3.4.5) AT1G79990 1444 / 0 structural molecules (.1.2.3.4.5) AT2G21390 265 / 9e-74 Coatomer, alpha subunit (.1) AT1G62020 263 / 2e-73 Coatomer, alpha subunit (.1) AT3G49660 110 / 5e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 94 / 1e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 97 / 2e-20 TAF5 TBP-associated factor 5 (.1) AT1G11160 96 / 9e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 90 / 4e-18 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011467 [exp] 1341 / 0 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037524 [exp] 949 / 0 AT1G52360 1077 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037525 [exp] 476 / 1e-161 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 389 / 3e-128 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 380 / 3e-124 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10037538 [exp] 259 / 8e-74 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 261 / 2e-72 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 259 / 5e-72 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 258 / 2e-71 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179200 [exp] 1496 / 0 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 1491 / 0 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 448 / 8e-150 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.012G074800 [exp] 253 / 7e-70 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 251 / 3e-69 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.005G148500 [exp] 103 / 1e-23 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 97 / 1e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 97 / 1e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 94 / 1e-20 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 97 / 2e-20 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] Beta_propeller PF04053 [flax] [poplar] Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence Show only first row Show all	>Lus10033092 pacid=23176979 polypeptide=Lus10033092 locus=Lus10033092.g ID=Lus10033092.BGIv1.0 annot-version=v1.0 ATGTGCTGCGTGCTTGACTTAGATCAGCTAGGAATTCGAAGTTACGTTGAGCCTCTGAGACTTGATATCAAGAGGAAGTTCGTGCAAAGGAGTGAGAGGG TTAAGTCTGTAGATCTACATCCTACTGAGCCATGGATCCTCGCTGCTCTATATTCTGGCACTGTTTATATATGGAATTATCAGACACAGACAATGTCAAA GTCTTTCGAGGTCACCGATTTACCAGTTCGGTCAGCAAAATTCATTGCACGCAAACAGTGGGTCGTGGCTGGTGCTGATGACATGCTCATTCGTGTGTAT AACTATAACACAATGGACAAGATCAAAGATTTTGAAGCGCATACAGATTATATTAGAAGCCTTGCTGTCCATCCAACACTGCCGTATGTGTTGTCAGCAT CTGATGACATGCTCATCAAGCTTTGGGACTGGGAAAGGAATTGGATGTGCAATCAGATATTTGAAGGTCACTCACATTATGTCATGCAAGTAACTTTTAA TCCCAAAGATACCAATACGTTTGCCAGTGCATCACTTGACCACACTGTTAAGATTTGGAATATTCGGTCTCCGGATCCAAATTTCACTTTGGAAGCCCAT TCAAAGGGAGTTAATTGTGTAGACTATTTCACCGGTGGGGACAAACCTTATTTGATCACCGGTTCAGATGATCAAACGGCTAAGGTGTGGGACTACCAAA CTAAAAGCTGTGTTCAAACACTTGAGGGCCACACACACAATGTTTCTGCAGTTTGTTTCCATCCCGGGCTTCCAATTATATTCACAGCTTCTGAGGATGG TACTGTAAGGATATGGCATGCCACTACTTACAGGCTTGAAACTACTCTTAATTATGGACTTGAACGAGTTTGGGCCATTGGGTATATGAAGGGGTTGCGC AGGATTGTGATCGGATATGATGAAGGAGCTGTGATGATAAAAATTGGTAGAGAAGTACCTGTGGCTAGCATGGATAGCAGTGGAAAAGTAATTTGGGCCA AACATAATGAAATAGTAACAGTGAACATCAAAAGTATTGGAGCTGACAATGAGATTGCTGATGGAGAAAAATTGCCTTTGGCAGTAAAAGAGTTAGGAGC CTGTGAAATCTATCCTCAGGGCTTGAAGCACAACCCAAATGGAAGATTTGTGGTCGTTTGTGGTGATGGGGGGGGTATTATTTACACTGCTTTGGCCTGG AGGAATAGATCCTTTGGTTCTGCTTTGGAATTTATCTGGTCGTCTGATGGAGAATTTGCTGTCAGGGAAGGGTCTACAAAGATCAAGATTTTCAGTAAAA CTTTCCAGGAAAAGAAGAACATCCGTCCCACATTCTCTGCTGAACGCATTTTTGGAGGCACCTTACTAGCTATCTGCTCCAATGACTTCATCTGTTTCTA TGATTGGGCAGAATGCCGGCTAATTCAACGAATAGATGTTAACGTCAAGAATGTCTACTGGGCTGATAGTGGGGATTTATTGGCAATCACTAATGAGTCA TCATTTTACGTTCTCAAATATAATCGAGAGGTAGTGTCATCATATTTTGACAGTGGAAATACCACTGATGAACAAGGCATAGAGGATTCTTTCGAACTTC TCCATGAAATAAGCGAGAGAGTCAAAACCGGAATCTGGGTTGGGGATTGTTTCATATATAATAACTCTTCTTCACGCCTCAATTATTGTGTTGGTGGTGA GGTAACCACCATGTTTCACCTGGACCGGCCCATGTATCTACTAGGATATCTTGCTGCTCAAAGTCGTGTTTATCTTATTGACAAAGAGTTCAATGTTGTG GGATACACATTACTTATCAACTTGATCGAATACAAGACTCTTGTTATGCGTGGTGATCTAGAGCGTGCCAATGAAGTCTTGTCCACAATTCCCCAGGAGC ACCATAATAGTGTGGCCCGTTTCCTGGAATCTCGTGGTATGCAGGAGGATGCTCTAGAAGTTGCAACTGACCCCGACTACAAATTTGAACTAGCAATTCA ATTGGGCAAACTGGAGATAGCTAAGGAAATTGCTGATATTGCATGTAGTGAAAATAAGTGGAAGCTATTAGGGCAATTGGCTTTGTCCAAAGGAAAGTTG GAACTAGCTGAAGAATGTATGCTAAACGGATTGGACTTGAGTGGTTTGTTACTCCTTTATACTTCTCTTGGGGATGCCGAAGGCATTGTAAAACTTGTAT CCCTTGCGAAAGAACAAGGGAAAAATAATGTTGCATTTCTGTCGTTATTCATGCTGGGGAAAGTGGAGGAGTGCATCCAGCTGTTGGTGGATAGTAACCG TATACCTGAAGCTGCTTTGATGGCTCGTTCTTACATGCCAAGCAAGGTTTCAGAGATAGTGTCTACCTGGAAGGATGACCTAAACAAGATTAACCGGAGA GCTGCGGAGTCTCTGGCTGACCCCCTGGAGTATCCTAATTTGTTCGAGGACTGGCAGGTTGCTCTAGCTATTGAGTCCAAAGTTGCTGAGTCAAGAGTCT CTCATCTTCCCGCTGAGCACTATTTAACCCATTCTGAAAAGTCCAAGACCAGCCTCATCGAAACTTTCAGAAGCCTGCAGGTTGAAACTGAGGAGGCAAG TCAAAATGGAGATCTGGATGATGAGGAATTAGTTGATGAAATGCATGAAAATGGAGATGATGAAGTGACCGAGGAACCTGCGGAGGGGGATGCTGATGTT GATGCCGACGCTGATGCTGATTCAACAAATGGCGCTGTACTCGTGGATAGCAATGAAGCTCAAGAAGAATGGCTTGCTGATAAAGAAGCAACTTCGTCAG CCTAA
AA sequence Show only first row Show all	>Lus10033092 pacid=23176979 polypeptide=Lus10033092 locus=Lus10033092.g ID=Lus10033092.BGIv1.0 annot-version=v1.0 MCCVLDLDQLGIRSYVEPLRLDIKRKFVQRSERVKSVDLHPTEPWILAALYSGTVYIWNYQTQTMSKSFEVTDLPVRSAKFIARKQWVVAGADDMLIRVY NYNTMDKIKDFEAHTDYIRSLAVHPTLPYVLSASDDMLIKLWDWERNWMCNQIFEGHSHYVMQVTFNPKDTNTFASASLDHTVKIWNIRSPDPNFTLEAH SKGVNCVDYFTGGDKPYLITGSDDQTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPGLPIIFTASEDGTVRIWHATTYRLETTLNYGLERVWAIGYMKGLR RIVIGYDEGAVMIKIGREVPVASMDSSGKVIWAKHNEIVTVNIKSIGADNEIADGEKLPLAVKELGACEIYPQGLKHNPNGRFVVVCGDGGGIIYTALAW RNRSFGSALEFIWSSDGEFAVREGSTKIKIFSKTFQEKKNIRPTFSAERIFGGTLLAICSNDFICFYDWAECRLIQRIDVNVKNVYWADSGDLLAITNES SFYVLKYNREVVSSYFDSGNTTDEQGIEDSFELLHEISERVKTGIWVGDCFIYNNSSSRLNYCVGGEVTTMFHLDRPMYLLGYLAAQSRVYLIDKEFNVV GYTLLINLIEYKTLVMRGDLERANEVLSTIPQEHHNSVARFLESRGMQEDALEVATDPDYKFELAIQLGKLEIAKEIADIACSENKWKLLGQLALSKGKL ELAEECMLNGLDLSGLLLLYTSLGDAEGIVKLVSLAKEQGKNNVAFLSLFMLGKVEECIQLLVDSNRIPEAALMARSYMPSKVSEIVSTWKDDLNKINRR AAESLADPLEYPNLFEDWQVALAIESKVAESRVSHLPAEHYLTHSEKSKTSLIETFRSLQVETEEASQNGDLDDEELVDEMHENGDDEVTEEPAEGDADV DADADADSTNGAVLVDSNEAQEEWLADKEATSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	0	1
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	1.0	0.9410
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	1.4	0.9389
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	3.0	0.9284
AT1G05520			Sec23/Sec24 protein transport ...		Lus10041256 [exp]	3.5	0.9143
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	5.2	0.9033
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	5.7	0.9242
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	6.3	0.9161
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	8.3	0.8752
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	8.9	0.8772
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10017329 [exp]	9.4	0.8994

Compare expression of checked genes

Lus10033092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.