Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24490 221 / 2e-69 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT5G05550 74 / 1e-14 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G14180 74 / 3e-14 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G58630 69 / 8e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 69 / 1e-12 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G54390 62 / 2e-10 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24860 61 / 4e-10 Trihelix Homeodomain-like superfamily protein (.1) AT1G54060 59 / 3e-09 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT2G44730 55 / 5e-08 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G11100 51 / 4e-07 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017725 [exp] 595 / 0 AT3G24490 243 / 1e-77 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019388 [exp] 276 / 3e-89 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10025772 [exp] 206 / 6e-63 AT3G24490 223 / 3e-70 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10035893 [exp] 196 / 6e-59 AT3G24490 214 / 1e-66 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10015282 [exp] 70 / 4e-14 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 72 / 7e-14 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 71 / 2e-13 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 68 / 1e-12 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10013179 [exp] 59 / 4e-09 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075500 [exp] 304 / 3e-101 AT3G24490 252 / 1e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G179800 [exp] 212 / 9e-65 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G056000 [exp] 194 / 6e-58 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.008G071300 [exp] 89 / 9e-20 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.T126206 [exp] 77 / 3e-15 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 76 / 5e-15 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 68 / 1e-12 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 67 / 2e-12 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 60 / 1e-09 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 59 / 4e-09 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033094 pacid=23177015 polypeptide=Lus10033094 locus=Lus10033094.g ID=Lus10033094.BGIv1.0 annot-version=v1.0 ATGGACCATGCGGAAGACGATGGCAGGTACTCACATAAAGCTTACCCGCACAATCGCACAACAAAGAAGTCGTCGATGTACTCCCACCGTCCCGTTTCCT CTTTCTACAACCGCCACGACTACGCCGGGAACGACGACCCAGAAGAAGACGAGGAGGACGATTTCGACGACAACGGCATGGAGTCCGACGATAACAACAA CATCGGCAGAGACTACCCTAACGATTACGAAGAGAAGGACGGATTCGGTAGGTACCCTAAGAGGCAGAAGAAGGTCAAGAATTCGGTTTCCAATAATTAC GAATTGGTGCCTCGATCCAGGATGGCTAGCAATAATAATAACGGGGAATCGGATTTCTCAGGGGAGTGGAGTGAACAAGAGAAGTTCGTTCTTTTGGAGG TTTGGGGTGAGAGGTTTTTGCAATTGGGAAGGAACAGCTTGAGGTCTATCGATTGGGTGGAGGTTGCTGAGAAAGTTTCCGAGGAATTGAAAATAAAGAG GAGAGAAGCTCAATGCAGGCTGCTGATGGATTCGTTAAAGAGGAGGTACAGGAAAGAGAAGGCGAAAGGAGGGCATGTGGTTAGTAAATGGGCGTTTTAT AGGAAGATGGATATGTTGATGAGGCAAGAGAATGGGAGTGTTGGGAGTAGTAGTGGTGGCTTTAGTTTATCTTGCGGTGTGGATTCAGGAGAGTATGTGT TTATGGATACAGGAGTGTATTTAGAACGTGCCAATGGGTTTGATGAGATGAGAGATAGTCCTTGTGAGTCTGAGGAGGAAGATGATGATGAAGAAGATGA TGATGATAAGGGGGAGGTGAGCGGTGATATGTTCAAAGGGTTAACTGTGTTGGCCGACTCTGTTCATAAGTTCGGCGAGATATATGAGAAGATAGAAAGC AGTAAGAGGGATCAGATGTTAGAGTTGGAGAGAATGCGGGTCGACTTTCAGAGAGAATTGGAGCTGCAGAAGAAACAGATCTTGGAGAGAGCTCAGACTG AGATTTCTAAGATCAGAGATGAGGATGATGGTGATGATGATGAGGAGGAGGAGGAGGATACTGATACCGACTCTGATGCGGCTGCTGATGGTGTTAACGA CAATGGAGATGGGGAAGCCATTGAAAGTGACAATGAGAGCGGTGATGATGATTTGGGAGTGAATGTCAGCGAATAA
AA sequence Show only first row Show all	>Lus10033094 pacid=23177015 polypeptide=Lus10033094 locus=Lus10033094.g ID=Lus10033094.BGIv1.0 annot-version=v1.0 MDHAEDDGRYSHKAYPHNRTTKKSSMYSHRPVSSFYNRHDYAGNDDPEEDEEDDFDDNGMESDDNNNIGRDYPNDYEEKDGFGRYPKRQKKVKNSVSNNY ELVPRSRMASNNNNGESDFSGEWSEQEKFVLLEVWGERFLQLGRNSLRSIDWVEVAEKVSEELKIKRREAQCRLLMDSLKRRYRKEKAKGGHVVSKWAFY RKMDMLMRQENGSVGSSSGGFSLSCGVDSGEYVFMDTGVYLERANGFDEMRDSPCESEEEDDDEEDDDDKGEVSGDMFKGLTVLADSVHKFGEIYEKIES SKRDQMLELERMRVDFQRELELQKKQILERAQTEISKIRDEDDGDDDEEEEEDTDTDSDAAADGVNDNGDGEAIESDNESGDDDLGVNVSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	3.0	0.8629
AT5G48385			FRIGIDA-like protein (.1)		Lus10001723 [exp]	3.6	0.7820
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	3.9	0.8374
AT4G08580			microfibrillar-associated prot...		Lus10020321 [exp]	4.9	0.8365
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	5.1	0.8575
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	6.5	0.8203
					Lus10031351 [exp]	8.4	0.8213
					Lus10037794 [exp]	9.2	0.7131
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	10.5	0.7830
					Lus10014600 [exp]	10.6	0.7928

Compare expression of checked genes

Lus10033094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.