Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24495 1113 / 0 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 241 / 4e-65 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G25540 184 / 4e-47 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G18524 145 / 3e-35 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 126 / 2e-29 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G24320 87 / 5e-17 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 81 / 4e-15 DNA mismatch repair protein MutS, type 2 (.1) AT3G20475 80 / 6e-15 ATMSH5 MUTS-homologue 5 (.1) AT1G65070 72 / 1e-12 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017724 [exp] 1755 / 0 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10010010 [exp] 218 / 8e-58 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10027452 [exp] 140 / 1e-35 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10005743 [exp] 144 / 9e-35 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 142 / 4e-34 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 134 / 1e-31 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10028966 [exp] 129 / 3e-31 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10000017 [exp] 115 / 2e-30 AT3G24495 103 / 2e-27 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10007489 [exp] 112 / 3e-25 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G156314 [exp] 1276 / 0 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 1274 / 0 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121701 [exp] 210 / 2e-55 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.014G121601 [exp] 170 / 1e-44 AT4G02070 563 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 140 / 9e-34 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.015G142900 [exp] 140 / 1e-33 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.008G191051 [exp] 130 / 1e-33 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.001G156200 [exp] 137 / 5e-33 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.008G190950 [exp] 125 / 5e-31 AT4G02070 410 / 2e-133 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 83 / 1e-15 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01624 [flax] [poplar] MutS_I MutS domain I CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III CL0023 [flax] [poplar] PF05188 [flax] [poplar] MutS_II MutS domain II
Representative CDS sequence Show only first row Show all	>Lus10033095 pacid=23177057 polypeptide=Lus10033095 locus=Lus10033095.g ID=Lus10033095.BGIv1.0 annot-version=v1.0 ATGCAGAAAACACTCCATTCATTCTTCCAAAAGTCCTCTCCGGCCTCGGCTAATCGGAGCTCCGGCAGCAAGGACATCCCTCACTGTCAGCCGGCGGTGG ATGACTCGACCAAGGAACAGAATAAGCAAACACGTCTTCCAAGTCAGACTGTGAGCTCATCCGAGGAAGTCAGAGGGACCGATACACCTCCGGAGAAGGT TCCTCGTCAGATACTACCTCCGAACTTCTCGGCGAGTTCTGACTCTGGAGGTCCTTCGCTCTTCTCCAGCATTCTGCACAAGTTCGCGAGGGCCCCAATA AGAGATAGTCTTGATAGGAATCAGGCTGATTCGACTACTGTTTGCTTGACTTCTGGTCCAGCTGTTGGCCGGGGAGGATCGCAGAAACTAGGTACTACTG CTGAAATTTCCCGAAAAGACAGTAGTGCTAAGTCCATTCAGCAAGAATTTTTCTTACCCTCTGATGGAGATGGTGATGTCCTGGGGCCTGAAACACCTGG TTTGCAACCACTAGTTTCTCGGTTTAAGCGAATTCATGAAGAAATTCCAAAGTTAGGTGATAAGTTGGATTGTTCCTTGCTGGATACTGGCAAACGAGCA AAACTTGTACATGAGTCCACTGCCTTGGGAAAGAATAAAGGAGAAGTTTCTGATGATTTAGCTAGCAAATTTGAGTGGCTTAACCCTGCTAGTATCAGGG ATGCCAATAGAAGAAGGCCTGACCATCCTCTTTATGACAAAAAGACTCTTTATATTCCACCTGATGCGCTGAAGAAGATGTCAGCATCTCAGAAGCAATA TTGGACTGTCAAGTCTCAATACATGGATGTTCTGCTTTTCTTTAAAGTGGGAAAGTTTTATGAGCTCTATGAGCTGGATGCTGAAATTGGTCACAAGGAA CTTGATTGGAAAATAACATTAAGTGGCGTGGGAAAATGTCGGCAAGTTGGAATATCCGAATTCGGTATTGATGATGCCATAGAGAAACTGGTTGCTCGTG GATTTAAAGTTGGGAGAGTTGAGCAGTTGGAGACAGCTGATCAAGCAAAGGCCAGAGGTGGAAGTTCGGTCATCACCAGAAAATTAGTCCAGGTTCTTAC ACCATCAACTACGACAGATGGTATTGTTGGCCCAGATGCTGTTCATCTTCTTGCATTGAAGGAGGGAAATAATGGGATGGAAAGTGGCGGAACAAATTAT GGATTTGCTTTCGTTGATTGTGCTGCTCTACGCTTTTGGATCGGCTCCATACGTGATGATGCCTCCTGTTCTGCGTTGGGGGCATTGTTAATGCAAATCT CACCTAAAGAAGTTATTTATGAAAGTAGAGGGCTGTCCAAAGAAGCTCAGAAAGCACTTAGAAAGTTCTCATTAGCTGGTTCTGCAGCATCTCAGTTGAC TCCAGTGCTGCCTCCTGCTGATTTTGAGGATGCTTCTGAAGTGAGAAATTTGATTCAGTTAAAGGGATACTTTTCAGGGTCAACTAGCCCACTGAAGAAT GCACTTGACAGTTTATTCCACAAAGATCTAGCCTTATCAGCTCTTGGTGGTCTTACTGGTCATCTGTCTCGGCTGATGTTGGATGATGTTTTACGCAATG GTGATGTTCTACCTTATGAAGTTTATAGAGGTTGCCTCAAATTGGACGGGCAAACTCTAGCTAACCTTGAAATATTTAATAATAATGCAGATGGTGGTTT ATCAGGCAACTGCGTCATGTCATCTGGGAAGCGGCTTTTGAGGAAGTGGATCTGCCATCCATTGAAATGTGCTACAGGCATTAACAATAGGCTTGATGCG GTTGAAGCCCTAACTTCTCGTCCTGAAGTTATGCTTATTACGTCTCAATATCTACGGAGACTGCCGGATTTGGAAAGGCTGCTTGGGCGTGTTAAGGCTA GCATTCAGGCATCTGCCTGTCTTGCACTGCCCTTAATTGGCAAGAAAGTATTGAAACAACGTGTGAAAGTATTTGGGACTTTGGTAAAAGGGCTTCGGGT TGCAATTGATTTATTATCCTTGCTACAGAATGAAGAGTACCTAAATTCATCTCTGTCTAAAGTTTTTGAAATTCCTGAGCTCAAAGGTGATTCAGGCCTT GACAAATTTCTTTCCCAATTTGAGGCAGCTGTGGATTGTGAGTTCCCAGATTACCAGAACCATGTAGTTACGGATTCAGAGGCAGAGACACTTACTGTAC TATTCGAGGTGTTCGTGGAGAAAGCTCGAGAATGGTCAGAAGTCATTCATGCCATCAATTGCATTGATGTGCTAAGATCTTTCGCTGTGAAAGCAAGTAC GTCATTTGGGGCAATGTCTCGTCCTGTAATCTTGCCTCGAACGTCAACAATGCTGGGGCAGGAGATTGGCGGGCCTGTACTTAAAATTAAAGGGCTGTGG CATCCTTTTGCCCTCGGCGAGAATGGACAACCTGTCCCAAATGATCTACACCTTGGTGAAGATTCAGATGGCTATTGTCCTCGCACTTTGCTATTGACTG GACCAAATATGGGTGGAAAATCAACCCTTCTTCGTGCCACATGTCTGGCTGTGATACTGGCCCAGCTGGGCTGTTATGTGCCGAGCGAGAAGTGTGAGCT TTCGCTGGTTGATGTAATCTTCACTCGGCTTGGTGCCACTGATCGAATCATGTCAGGGGAGAGTACATTCCTGGTGGAGTGTTCAGAAACAGCTTCCATT CTCCAGAATGCAACTCAAGATTCCTTAGTAATCCTGGACGAATTGGGTCGTGGAACCAGCACTTTCGACGGATATGCCATTGCATACGCTGTACTACGGC ATCTGGTAGAGAAAGTAAACTGCAGACTGCTGTTTGCGGCGCAGTGTGTGGCGGGGCAGCTGGAGTGGCGAGCCTCACAGGGATGCGGACTGATGCGTGA GTCGGGCGGGGAAAGCTTCAAGATGAGCGAGCAGAGGGCTGAGTTCTCAACTCTGCATGAAGAATGGGTGAGGAGCCTGGTGAACCTGGTTAGAGGAGCA GAGCAGGAAAGCAAGTTTGAAGAACTGGACAAGGATGATGATTTTGACACATTGGTTTGCTTGTGGCACGAGCTCAGGAGTGTTCGTGGACTGACCAAAT GA
AA sequence Show only first row Show all	>Lus10033095 pacid=23177057 polypeptide=Lus10033095 locus=Lus10033095.g ID=Lus10033095.BGIv1.0 annot-version=v1.0 MQKTLHSFFQKSSPASANRSSGSKDIPHCQPAVDDSTKEQNKQTRLPSQTVSSSEEVRGTDTPPEKVPRQILPPNFSASSDSGGPSLFSSILHKFARAPI RDSLDRNQADSTTVCLTSGPAVGRGGSQKLGTTAEISRKDSSAKSIQQEFFLPSDGDGDVLGPETPGLQPLVSRFKRIHEEIPKLGDKLDCSLLDTGKRA KLVHESTALGKNKGEVSDDLASKFEWLNPASIRDANRRRPDHPLYDKKTLYIPPDALKKMSASQKQYWTVKSQYMDVLLFFKVGKFYELYELDAEIGHKE LDWKITLSGVGKCRQVGISEFGIDDAIEKLVARGFKVGRVEQLETADQAKARGGSSVITRKLVQVLTPSTTTDGIVGPDAVHLLALKEGNNGMESGGTNY GFAFVDCAALRFWIGSIRDDASCSALGALLMQISPKEVIYESRGLSKEAQKALRKFSLAGSAASQLTPVLPPADFEDASEVRNLIQLKGYFSGSTSPLKN ALDSLFHKDLALSALGGLTGHLSRLMLDDVLRNGDVLPYEVYRGCLKLDGQTLANLEIFNNNADGGLSGNCVMSSGKRLLRKWICHPLKCATGINNRLDA VEALTSRPEVMLITSQYLRRLPDLERLLGRVKASIQASACLALPLIGKKVLKQRVKVFGTLVKGLRVAIDLLSLLQNEEYLNSSLSKVFEIPELKGDSGL DKFLSQFEAAVDCEFPDYQNHVVTDSEAETLTVLFEVFVEKAREWSEVIHAINCIDVLRSFAVKASTSFGAMSRPVILPRTSTMLGQEIGGPVLKIKGLW HPFALGENGQPVPNDLHLGEDSDGYCPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCYVPSEKCELSLVDVIFTRLGATDRIMSGESTFLVECSETASI LQNATQDSLVILDELGRGTSTFDGYAIAYAVLRHLVEKVNCRLLFAAQCVAGQLEWRASQGCGLMRESGGESFKMSEQRAEFSTLHEEWVRSLVNLVRGA EQESKFEELDKDDDFDTLVCLWHELRSVRGLTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	1.4	0.9010
AT5G60370			unknown protein		Lus10023343 [exp]	4.0	0.8731
AT4G17140			pleckstrin homology (PH) domai...		Lus10006816 [exp]	4.0	0.8441
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040568 [exp]	4.6	0.8717
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	4.9	0.8463
AT3G17740			unknown protein		Lus10031899 [exp]	5.7	0.8338
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	5.7	0.8617
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	7.3	0.7930
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	7.5	0.8345
AT1G27460		NPGR1	no pollen germination related ...		Lus10018679 [exp]	8.5	0.8361

Compare expression of checked genes

Lus10033095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.