Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74720 1508 / 0 QKY QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G17980 814 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 777 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 770 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 751 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 746 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 740 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 720 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G03680 712 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 675 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010658 [exp] 790 / 0 AT5G17980 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 780 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 775 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 745 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 744 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 743 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 721 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 665 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 657 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G098700 [exp] 1555 / 0 AT1G74720 1272 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G113800 [exp] 1532 / 0 AT1G74720 1521 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.013G055500 [exp] 819 / 0 AT5G17980 1233 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 781 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 780 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 756 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 753 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 741 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 740 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 740 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10033097 pacid=23177049 polypeptide=Lus10033097 locus=Lus10033097.g ID=Lus10033097.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCCCGCCCACCGGTCCTCCCCCTCAGCACATGGTCCGTAAGCTAGTCGTCGAAGTTGTAGAAGCACGAGACCTTCTCCCCAAGGATGGCC AAGGCAGCTCCAGCCCATACGTAATCGCCGACTTCGACGGCCAACGCAAGCGCACCTCCACCAAGTACCGCGACCTCAACCCCGTTTGGAACGAGCCTCT CGAGTTCCTCGTCTCCGATCCCAACAACATGGACCACGAAGAGCTCGAGATCGAGGTCTTCAACGACAAGCGCTTCGGCAATGGCAGCGGCCGTAAAAAC CACTTCCTCGGCAGGGTCAAGCTCTACGGTTCTCAGTTCGCCAAGCGCGGTGAGGAAGGCCTTGTTTACTTTTCCCTCGAGAAGAAGAGCGTCTTCAGTT GGATTAGAGGTGAGATTGGCCTTAGGATTTGTTACTACGATGAGATGGTGGAAGACGATCAGCAGCAGCAGCAGCAACAACAGCACCCTCCTCCTCCCAC TAATAATCCTCTTCCTCCTCTGCCGCCAGAGCAGGAGTTGCCACCGCCTCCCGATCAACATCAGCAGCAGCAGCCACCGGCTGGGGGGGGGGTGGAAGAA GGTAGAGTTTTCCAAGTCCCTGGCTCTCATGGTGACATTGCTCACAGTCAGCGCCATAATTATCGCCCCGACGGATCTTACTCACCGCCGCCGGCTGTTG TTATTGAAGAATCTCAGCCTCCTATTGTTCATATGCACTCCGGTGAGCCGCCGCCTCATTCTCATCCTGATCCGGCCGGACCTCCGTCTCCTATGCCGGA GATGCAGTATCCCCAACCGCCGGATTCCAGATCAATGCACACAGCCAGAGTGATTAACGGCGGAGGCGAGAGAATGAGGATTTTGAAGAAGCCAAACGGT GATTTTTCTCCTAGAGTCCTTTCCTCTAGAGTTCCAAACGACACAGAAAGGATTCATCCTTACGATCTAGTTGAGCCGATGCAGTATCTGTTCATCAGAA TCGTCAAAGCACGTGGATTGTCGCCGAACGAGAGTCCGTACGTGAAGATTAGGTCATCGAATCATTTTGTGAGGTCTAAGCCGGTGAATTACCGGCCTGG TGAGACACCGGACTCGCCCGAGTGGAACCAGGTCTTTGCACTCGGTCACAACAGGCCTGACACGGCGAGTGCGACTCTAGAAATTTCTGTTTGGGACGCG CCGACGGAACAGTTTCTCGGTGGCGTTTGCTTCGACCTCTCCGATGTCCCTGTGCGTGATCCTCCGGACAGTCCGCTTGCTCCTCAGTGGTACAGACTAG AAGGCGGAGCCGCTGAACAAAATTCCGACAGAGTCTCCGGTGACGTCCAACTGTCAGTCTGGATAGGAACTCAAGCAGACGATGCCTTCCCGGAGGCATG GAGCTCCGACGCACCGTACGTTGCACACACGCGCTCGAAGGTTTATCAATCTCCCAAGCTGTGGTACCTGCGAGTCACAATAATTGAGGCTCAAGATTTA AACATCGCTCCCAATCTTCCTCCATTAACGGCACCGGAGATCCGTATCAAGGGGCAATTAGGTTTTCAATCGGTCAGATCCAGACGAGGGTCAATGAACA ATCATACGGCGTCATTTCACTGGAACGAAGATCTTATTTTCGTCGCTGGGGAGCCTTTGGAAGATTCTCTGATCATACTAGTGGAAGACCGAACAAGCAA GGATGTCATGCTTCTCGGGCACATGGTAATTCCAGTGAACTCGATAGAGCAACGGTTGGATGATCGACACCTATCATCCAAATGGTTCACACTAGAAGGC GTATCCAACATGGGACCTCCACAGGGCCCACCACCTGAACAGAACGGTGGATCGTACTACGGGAGGGTCCATCTCCGGCTGTGCTTGGAGGGAGGGTATC ACGTGCTGGACGAAGCGGCGCACGTGTGCAGCGATTTCAGACCGACGGCCAAACAGCTGTGGAAGCCGGCCGTTGGAATTTTGGAGCTAGGGATTTTAGG TGCTCGCGGATTGCTCCCGATGAAGAACAAAGGCGGAGGGAAAGGCTCGACGGATGCCTACTGTGTTGCCAAGTACGGCAAGAAGTGGGTCCGCACAAGA ACAGTCACCGACAGCTTTGATCCAAGGTGGAACGAGCAGTACACGTGGCAGGTCTACGACCCTTCTACCGTATTGACCATCGGGGTGTTTGATAACTGGC GGATGTTCGCTGATCCGTCCGAGGAAAGACCCGACTGCCGCATCGGTAAGATCCGAATCCGCGTTTCCTCCCTGGAGAGCAATAAGGTTTACACCAATTC GTATCCTTTGTTGGTCTTGTTCAGAAATGGGCTGAAGAAAATGGGCGAGATTGAGATAGCGGTTCGGTTCGGGTGTCCGAATTTACTACCGGAGACATGC GCAGTTTACGGCCAGCCAATGCTTCCTCGGATGCACTATCTCCGGCCATTGGGAGTGGCTCAGCAAGAGGCACTGCGAGGCGCGGCGACGAAGATGGTCG CTCAGTGGCTAACCCGATCAGAGCCGCCGCTGGGACCGGAAGTGGTGAGGTACATGTTGGATGCGGATTCTCACGCGTGGAGCATGAGGAAGAGCAAGTC CAATTGGTTTAGGATCGTAGCGGTTCTAGCATGGGCGGTGGGGTTGGCAAAATGGTTGGACGACATCCGACGGTGGAGTAACCCGATTACAACAGTAATG GTACATATACTGTATTTGGTGCTGGTTTGGTACCCGGATTTGGTGGTCCCAACTGGATTCCTATACTTGTTCGTAATCGGAGTGTGGTACTATCGGTTCC GACCGAAGATTCCGGCGGGGATGGATATAAGGCTGTCACAGGCGGAGACAGTGGATCCGGAGGAGCTGGACGAGGAATTCGACACAATACCGAGCTCGAG GGCGCCGGAGGTAGTGAGGGCGAGGTACGACAGGTTGAGGATACTGGCTGCGCGTGTGCAAACGGTGTTGGGGGATATAGCAACGCAAGGGGAGAGGATG CAGGCGTTGGTTAGCTGGAGGGACCCACGAGCGACGAAGATGTTCATAGGGGTGTGTTTGGGGATAACGATAATAATGTATGTGGTCCCACCGAAAATGG TGGCAGTGGCATTGGGGTTCTATTATTTGAGGCACCCAATGTTTCGGGACCCTATGCCGCCGGCGAGCTTGAATTTTTTCAGGCGGCTTCCTAGCTTGTC CGATCGGTTAATGTAG
AA sequence Show only first row Show all	>Lus10033097 pacid=23177049 polypeptide=Lus10033097 locus=Lus10033097.g ID=Lus10033097.BGIv1.0 annot-version=v1.0 MAAAPPTGPPPQHMVRKLVVEVVEARDLLPKDGQGSSSPYVIADFDGQRKRTSTKYRDLNPVWNEPLEFLVSDPNNMDHEELEIEVFNDKRFGNGSGRKN HFLGRVKLYGSQFAKRGEEGLVYFSLEKKSVFSWIRGEIGLRICYYDEMVEDDQQQQQQQQHPPPPTNNPLPPLPPEQELPPPPDQHQQQQPPAGGGVEE GRVFQVPGSHGDIAHSQRHNYRPDGSYSPPPAVVIEESQPPIVHMHSGEPPPHSHPDPAGPPSPMPEMQYPQPPDSRSMHTARVINGGGERMRILKKPNG DFSPRVLSSRVPNDTERIHPYDLVEPMQYLFIRIVKARGLSPNESPYVKIRSSNHFVRSKPVNYRPGETPDSPEWNQVFALGHNRPDTASATLEISVWDA PTEQFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGGAAEQNSDRVSGDVQLSVWIGTQADDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVTIIEAQDL NIAPNLPPLTAPEIRIKGQLGFQSVRSRRGSMNNHTASFHWNEDLIFVAGEPLEDSLIILVEDRTSKDVMLLGHMVIPVNSIEQRLDDRHLSSKWFTLEG VSNMGPPQGPPPEQNGGSYYGRVHLRLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPAVGILELGILGARGLLPMKNKGGGKGSTDAYCVAKYGKKWVRTR TVTDSFDPRWNEQYTWQVYDPSTVLTIGVFDNWRMFADPSEERPDCRIGKIRIRVSSLESNKVYTNSYPLLVLFRNGLKKMGEIEIAVRFGCPNLLPETC AVYGQPMLPRMHYLRPLGVAQQEALRGAATKMVAQWLTRSEPPLGPEVVRYMLDADSHAWSMRKSKSNWFRIVAVLAWAVGLAKWLDDIRRWSNPITTVM VHILYLVLVWYPDLVVPTGFLYLFVIGVWYYRFRPKIPAGMDIRLSQAETVDPEELDEEFDTIPSSRAPEVVRARYDRLRILAARVQTVLGDIATQGERM QALVSWRDPRATKMFIGVCLGITIIMYVVPPKMVAVALGFYYLRHPMFRDPMPPASLNFFRRLPSLSDRLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	0	1
AT4G03010			RNI-like superfamily protein (...		Lus10042681 [exp]	2.0	0.8895
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	2.6	0.9188
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	3.7	0.9151
AT5G06850			C2 calcium/lipid-binding plant...		Lus10021030 [exp]	4.5	0.8881
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	4.9	0.9104
AT1G62870			unknown protein		Lus10004325 [exp]	7.3	0.8747
AT1G16380		ATCHX1	CATION EXCHANGER 1, Cation/hyd...		Lus10024132 [exp]	9.9	0.8575
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	10.2	0.8818
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	11.3	0.8551
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	12.6	0.8748

Compare expression of checked genes

Lus10033097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.