Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62740 533 / 0 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 495 / 3e-179 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) AT3G01290 475 / 2e-171 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 351 / 3e-122 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 59 / 6e-10 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT4G27585 54 / 3e-08 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004268 [exp] 530 / 0 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 526 / 0 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 522 / 0 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10037213 [exp] 495 / 4e-179 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10036715 [exp] 493 / 2e-178 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10038907 [exp] 338 / 2e-117 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015032 [exp] 337 / 9e-117 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10032909 [exp] 61 / 3e-10 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015597 [exp] 44 / 0.0001 AT4G27585 383 / 7e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078100 [exp] 523 / 0 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 513 / 0 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G070500 [exp] 511 / 0 AT5G62740 484 / 3e-175 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 347 / 1e-120 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 345 / 9e-120 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G065001 [exp] 316 / 2e-109 AT5G62740 312 / 4e-108 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 60 / 4e-10 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 57 / 3e-09 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10033099 pacid=23176968 polypeptide=Lus10033099 locus=Lus10033099.g ID=Lus10033099.BGIv1.0 annot-version=v1.0 ATGGGTAATCTATTTTGCTGTGTACAAGTCGATCAATCCACTGTAGCGATAAGGGAACAATTCGGGAAGTTTGATGAAGTTCTCGAGCCTGGATGCCACT GTCTGCCATGGTTTCTTGGGAGCCAACTAGCTGGCCATCTGTCTCTGAGAGTTCAGCAACTGGATGTTCGTTGTGAGACCAAGACAAAGGACAATGTTTT TGTTACTGTTGTTGCTTCTGTTCAGTATCGTGCCCTGGCAGAGAGGGCAAACGATGCTTTCTACAAGCTCAGCAACACTAGGGGCCAAATCCAAGCTTAT GTGTTTGATGTTATTAGAGCAAGTGTCCCAAAACTCAATTTGGATGATACTTTTGAGCAGAAAAATGACATCGCGAAAGCTGTAGAAGATGAACTTGAAA AGGCTATGTCTCACTACGGCTATGAGATTGTGCAAACGCTTATTGTCGACATAGAACCGGATGAGCGTGTAAAGAAGGCAATGAATGAAATTAATGCTGC TGCAAGAATGAGGGTGGCAGCTAATGAGAAGGCAGAGGCTGAAAAGATTCTGCAAATCAAGCGGGCTGAGGGTGAGGCTGAGTCGAAGTACCTTTCAGGG TTGGGTATTGCTCGCCAGAGGCAAGCGATTGTTGACGGTTTAAGGGACAGTGTGCTTGGCTTTTCTTCTAATGTACCTGGGACATCTGCAAAAGATGTCA TGGACATGGTCTTGGTTACACAGTACTTCGACACGATGAAGGAAATCGGTGCTGCCTCTAAATCCTCTGCTGTCTTTATTCCCCATGGTCCTGGTGCAGT TCGTGACGTTGCTGCTCAGATTCGGGATGGACTTCTCCAGAGTTCTGTTGCATAA
AA sequence Show only first row Show all	>Lus10033099 pacid=23176968 polypeptide=Lus10033099 locus=Lus10033099.g ID=Lus10033099.BGIv1.0 annot-version=v1.0 MGNLFCCVQVDQSTVAIREQFGKFDEVLEPGCHCLPWFLGSQLAGHLSLRVQQLDVRCETKTKDNVFVTVVASVQYRALAERANDAFYKLSNTRGQIQAY VFDVIRASVPKLNLDDTFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDERVKKAMNEINAAARMRVAANEKAEAEKILQIKRAEGEAESKYLSG LGIARQRQAIVDGLRDSVLGFSSNVPGTSAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVAAQIRDGLLQSSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	0	1
AT4G36160	NAC	ANAC076, VND2	VASCULAR-RELATED NAC-DOMAIN 2,...		Lus10015312 [exp]	1.0	0.9180
AT1G25500			Plasma-membrane choline transp...		Lus10041476 [exp]	5.3	0.8812
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	5.7	0.9054
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	5.9	0.9028
AT4G17250			unknown protein		Lus10028936 [exp]	6.0	0.8897
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	7.3	0.9148
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	7.7	0.8994
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	8.1	0.9130
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10031553 [exp]	8.2	0.8789
AT4G38640			Plasma-membrane choline transp...		Lus10025051 [exp]	8.3	0.8611

Compare expression of checked genes

Lus10033099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.