Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032874 [exp] 292 / 7e-100 AT5G27260 53 / 1e-07 unknown protein Lus10005725 [exp] 218 / 2e-72 ND / Lus10004397 [exp] 131 / 2e-36 AT5G27260 77 / 6e-16 unknown protein Lus10022379 [exp] 129 / 9e-36 AT5G27260 74 / 1e-14 unknown protein Lus10010798 [exp] 126 / 1e-33 AT5G27260 61 / 5e-10 unknown protein Lus10022993 [exp] 95 / 2e-23 ND / Lus10023062 [exp] 90 / 4e-21 AT4G02210 67 / 4e-12 unknown protein Lus10028091 [exp] 85 / 2e-19 ND / Lus10006034 [exp] 84 / 2e-19 AT5G27260 42 / 2e-04 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033100 pacid=23177056 polypeptide=Lus10033100 locus=Lus10033100.g ID=Lus10033100.BGIv1.0 annot-version=v1.0 ATGGATAAGGCAAACAAATCTGCTAGTAGATCCGGTGCAAAGCATCATCCTAAGGCTCATGGGTTGAACAACACACCTTTGGAGTATTGGGAAGAGCTTT CTGAAATTTATGGAGAGTCCAGAGCTAATGGTTCAGATGCTGTCCAAATGGGTGATGCTGCGAATATAGCTGCAAATGTTATGAAAAATAACACCACAGT TGGTGATCTTATGGAAGAAGACAATACATGTTTTGAGGGTTATGAGTTTTGCGGTGGCGAAACTAATGAGACACAAGAAGACCTACTAAATGCTGGCTAT GACATCCATGCTACAAGCTTGAAGGAAACTGGAGTTCAAGCAAGTTGTAAAGAAAAGGGAAAGCAATCATCTGCATCGTCTAGCCAGAAACGAACTAGGC AGCAAGCAAACGATTCTGTTCTTGTTTCTATTGATGGAAAGATTGACAAGATGACCAAAACCGTTGTTGAAACTGCGCATAACATTGCGAGGATGGCAAA TACTTTCTGCATACATGATGAGACGACAATGAAGCAAAAAACGCTGTACAGCGAGATGGAGAAGTTCTCAGACCTAACTCGAGTTGACAAGATGAAAGCA ATGAGATTCTTCACCAAAGATGAAGGAGAAGCAGCAGCCTTTTTTCAGTTGCAGACAGATGAGGAGAAGTTGGAGTTCCTTCTGAACTTCGTCTTGTAA
AA sequence Show only first row Show all	>Lus10033100 pacid=23177056 polypeptide=Lus10033100 locus=Lus10033100.g ID=Lus10033100.BGIv1.0 annot-version=v1.0 MDKANKSASRSGAKHHPKAHGLNNTPLEYWEELSEIYGESRANGSDAVQMGDAANIAANVMKNNTTVGDLMEEDNTCFEGYEFCGGETNETQEDLLNAGY DIHATSLKETGVQASCKEKGKQSSASSSQKRTRQQANDSVLVSIDGKIDKMTKTVVETAHNIARMANTFCIHDETTMKQKTLYSEMEKFSDLTRVDKMKA MRFFTKDEGEAAAFFQLQTDEEKLEFLLNFVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033100 [exp]	0	1
AT2G14510			Leucine-rich repeat protein ki...		Lus10028407 [exp]	2.0	0.8226
					Lus10031358 [exp]	5.3	0.6844
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036781 [exp]	10.6	0.6910
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10011280 [exp]	26.2	0.6493
					Lus10028962 [exp]	27.2	0.6685
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10029808 [exp]	43.2	0.6846
AT1G78160		APUM7	pumilio 7 (.1)		Lus10036469 [exp]	47.8	0.6443
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017662 [exp]	66.2	0.6462
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10017048 [exp]	71.3	0.6825
					Lus10015043 [exp]	81.2	0.6861

Compare expression of checked genes

Lus10033100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.