Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 649 / 0 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT5G62730 628 / 0 Major facilitator superfamily protein (.1) AT1G27040 620 / 0 Major facilitator superfamily protein (.1.2) AT1G59740 322 / 1e-102 Major facilitator superfamily protein (.1) AT1G33440 317 / 8e-101 Major facilitator superfamily protein (.1) AT3G25280 313 / 3e-100 Major facilitator superfamily protein (.1) AT2G02040 304 / 1e-95 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G25260 300 / 4e-95 Major facilitator superfamily protein (.1) AT3G54140 295 / 1e-92 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 284 / 3e-88 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037217 [exp] 657 / 0 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 654 / 0 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 639 / 0 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 634 / 0 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10015240 [exp] 384 / 2e-126 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 366 / 7e-120 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10025881 [exp] 351 / 1e-114 AT3G25280 558 / 0.0 Major facilitator superfamily protein (.1) Lus10006477 [exp] 338 / 4e-109 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10032876 [exp] 338 / 6e-109 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070700 [exp] 730 / 0 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.010G034300 [exp] 671 / 0 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.004G064100 [exp] 395 / 9e-131 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 363 / 9e-119 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.002G249100 [exp] 349 / 5e-114 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 346 / 4e-112 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.019G067500 [exp] 339 / 4e-109 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 323 / 3e-103 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.004G229000 [exp] 323 / 1e-102 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 317 / 2e-100 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10033101 pacid=23177052 polypeptide=Lus10033101 locus=Lus10033101.g ID=Lus10033101.BGIv1.0 annot-version=v1.0 ATGGATGAAGCACGCATCTTGGATACCTGGAAAGGCTATGTTGACTGGAGGAGTAGACCTGCTGTGAGAGGTCGTCATGGGGGAATGCTAGCAGCTTCCT TTGTATTGGCTGTGGAGGTACTAGAAAACCTAGCATTCCTGGCTAATGCAAGTAACCTTGTGCTCTACCTATCAAGGTTCCTGCATTTCTCTCCATCCGC CTCGGCGAATATTGTGACCAATTTCATGGGCACATCCTTCCTCCTAGCTTTGGCTGGTGGATTCCTAGCGGATGCCTTTCTCAATACCTACTGCATTTAT ATGATAAGTGCACTAATAGAATTCTTGGGTCTGTCAGTACTTACAGTGCAGGCTGGTATTGCCTCGTTGAGACCACCAGCATGTGCCACAAACACGAGTA TCTCTTGTGCAGAAGTGAGTGGCGAGAAGGAAGCAATGTTCTTTGCAGGTCTCTATCTGGTGGCACTGGGTGTTGGAGGGATCAAAGGTTCACTTCCCTC ACATGGTGCAGAGCAATTTGATGAGACTACTCAACTAGGAAGAAAGCAAAGATCATCATTCTTCAATTACTACGTATTCTTCCTTTCTTGCGGAGCCTTG ATCGCTGTTACGTTTGTAGTCTGGATTGAAGACAACAAAGGTTGGCAATGGGGTTTTGGAACGGCCACAGCTGCAATACTCCTGTCGATACCAGTGTTCA TCCTTGGCTCCCCAACATACAGGATCAAAGTTCCAACAGGCAGTCCCATCACCACCTTTTTCAAGGTTCTAGCATCGGCAGTTTACAACGTCACCAAATC TAGGAGTCCTAGCAATGCTATCATGGGAGTGGAGATGAGCTCCTGTGATCAAAATGACAGGACGAAGACCTCAACCACAACTACAACAGAAAGCCTCGAG TTCCTTAACAGAGCCACGAGAAACGACAGTAATAATGGCAACAGCAGAATACTCCAGTGTAGAACCAAAGAGGTAGAAGAAGTAAAGATAGTGGTGAAGA TACTGCCAATCTTCATGTCAACCATAATGCTAAATTGCTGCCTAGCCCAGCTATCTACCTTTTCTGTACAACAAGCAGCAACGATGAATACGAAGCTAGG TTCATTCAAAGTCCCACCAGCATCACTCCCTATCTTTCCTGTCATATTCATCATGATCCTGGCACCGGTGTACAACCACATGATAATCCCTTTTGCTAGA AGAGTTACAAAATCTGAAATGGGGATAACTCACTTACAAAGAATAGGGACAGGATTGGTATTATCAATTGTGGCAATGGTAGCAGCAGCTCTTGTGGAAA GCAAGCGGAAGAGGACGGCGGCGGAATCTGGATTACTCCTCGACGCTTCATCTACTTCGCCTCTTCCGGTGACATTCCTATGGATAGCATTGCAGTATTT GTTCCTTGGGTCGGCAGATCTTTTCACCTTAGCTGGAATGATGGATTTCTTCTTCTCGGAAGCGCCGTTGAGCATGAGGTCATTGGCGACATCTCTGTCT TGGGCATCACTGGCGATGGGATACTATCTCAGTTCTGTTCTCGTCTCGTTGGTGAACAGCATCACCGGTGCCTACCGACAAACGCCGTGGCTCTCCGGTG CCAATTTGAATCATTATCACCTCGATAGGTTTTACTGGTTGATGGGTGTGCTGAGCGGAATCAACTTCCTGCACTATCTTTTCTGGGCACGCCGCTACAA GTATAGATCAACAACTGAGGTTGAATCACATAATTAA
AA sequence Show only first row Show all	>Lus10033101 pacid=23177052 polypeptide=Lus10033101 locus=Lus10033101.g ID=Lus10033101.BGIv1.0 annot-version=v1.0 MDEARILDTWKGYVDWRSRPAVRGRHGGMLAASFVLAVEVLENLAFLANASNLVLYLSRFLHFSPSASANIVTNFMGTSFLLALAGGFLADAFLNTYCIY MISALIEFLGLSVLTVQAGIASLRPPACATNTSISCAEVSGEKEAMFFAGLYLVALGVGGIKGSLPSHGAEQFDETTQLGRKQRSSFFNYYVFFLSCGAL IAVTFVVWIEDNKGWQWGFGTATAAILLSIPVFILGSPTYRIKVPTGSPITTFFKVLASAVYNVTKSRSPSNAIMGVEMSSCDQNDRTKTSTTTTTESLE FLNRATRNDSNNGNSRILQCRTKEVEEVKIVVKILPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSFKVPPASLPIFPVIFIMILAPVYNHMIIPFAR RVTKSEMGITHLQRIGTGLVLSIVAMVAAALVESKRKRTAAESGLLLDASSTSPLPVTFLWIALQYLFLGSADLFTLAGMMDFFFSEAPLSMRSLATSLS WASLAMGYYLSSVLVSLVNSITGAYRQTPWLSGANLNHYHLDRFYWLMGVLSGINFLHYLFWARRYKYRSTTEVESHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62730			Major facilitator superfamily ...		Lus10033101 [exp]	0	1
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	5.7	0.7627
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	10.3	0.7531
AT2G15910			CSL zinc finger domain-contain...		Lus10023841 [exp]	10.7	0.7357
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011816 [exp]	17.3	0.7217
AT2G21290			unknown protein		Lus10018053 [exp]	19.4	0.7213
AT3G61490			Pectin lyase-like superfamily ...		Lus10036383 [exp]	24.0	0.7020
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	26.4	0.7140
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	26.8	0.7294
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021880 [exp]	35.2	0.7216
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019568 [exp]	41.7	0.6785

Compare expression of checked genes

Lus10033101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.