Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01470 151 / 4e-44 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT5G65310 138 / 8e-39 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT4G40060 137 / 2e-38 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT1G69780 135 / 7e-38 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT2G22430 133 / 6e-37 HD ATHB6 homeobox protein 6 (.1) AT5G15150 130 / 1e-35 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 124 / 1e-33 HD ATHB20 homeobox protein 20 (.1) AT1G27045 114 / 2e-30 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT3G61890 107 / 1e-27 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT2G46680 107 / 2e-27 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036674 [exp] 429 / 1e-152 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 258 / 5e-85 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10004270 [exp] 258 / 6e-85 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 152 / 2e-44 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 151 / 5e-44 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 137 / 1e-38 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 132 / 8e-37 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 132 / 9e-37 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 131 / 3e-36 AT4G40060 220 / 1e-70 homeobox protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065400 [exp] 267 / 6e-89 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 259 / 8e-86 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 148 / 9e-43 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.007G097100 [exp] 137 / 5e-38 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 136 / 7e-38 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.017G081700 [exp] 130 / 5e-36 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.002G100600 [exp] 129 / 1e-35 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G161500 [exp] 125 / 2e-34 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.010G093400 [exp] 126 / 4e-34 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.008G148200 [exp] 125 / 7e-34 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10033102 pacid=23177034 polypeptide=Lus10033102 locus=Lus10033102.g ID=Lus10033102.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTAACGGCAATGATACTGGTGATTGTATTACTAATTTCGCTCTTCTGAATCAGACTCCAACATTTTCTGGGCCACTTGAACCAGTTGTCC TCACTAGGTCGTCTTCTCCTTCTTTCTTCGGTCGGAGATCCAGAGTCCGTTTTGAGGATGCTGTGCGCTTATTCCAACTCAACGAGAATGGAGATGATGA CGATGAATATGATGATTTGGATGAGTATTTTCGGCAGCCAGAGAAGAAGAGGAGGCTATCAATTGACCAAGTTAAGTTTCTAGAGCAGAGCTTTGAGGTG GATAACAAGCTTGAACCTGAGAGGAAGACGCAGCTAGCCAAGGATCTCTCCCTGCAGCCTCGCCAGGTTGCTATATGGTTCCAGAACCGCCGAGCAAGGT GGAAGACTAAACAGCTGGAGCAGGATTATCGGACACTGGAGTCTAGCTATGACACTCTTAAGGCCGACTGCGATTGCCTTGTCAAGGAAAATGATCAATT AAAAACTGAGATCAATTTGCTCACAGACAAGCTGCAGATGAAGAAGGAGAATGTTGAAAAGGTGATGATAGTTTGCGAAGAGCCATTGCAGAAACCTTGT GCAGCCATTGACTGGGGATCTCCAGATGTTGTTAGCTGTAAGCAGGATGATATGAGCTCAGCTAGAAGCGATCTATTCGATTCAGACAGCCCGCATGGGG TTCACTCCTCATTGTTAGATGAATCGGATCATTCGCAGGATGAAGAAGATAACTCGAGCAAGAGTCTCCTGCCTGAATCATACTTTTTCCCAAAGCTAGA AGATGACGATTACTCGGACCCATCTGCAAACTTTGAAGACCATTCCTTCTGGTCCACCTCCTGGCCATACTGA
AA sequence Show only first row Show all	>Lus10033102 pacid=23177034 polypeptide=Lus10033102 locus=Lus10033102.g ID=Lus10033102.BGIv1.0 annot-version=v1.0 MAAANGNDTGDCITNFALLNQTPTFSGPLEPVVLTRSSSPSFFGRRSRVRFEDAVRLFQLNENGDDDDEYDDLDEYFRQPEKKRRLSIDQVKFLEQSFEV DNKLEPERKTQLAKDLSLQPRQVAIWFQNRRARWKTKQLEQDYRTLESSYDTLKADCDCLVKENDQLKTEINLLTDKLQMKKENVEKVMIVCEEPLQKPC AAIDWGSPDVVSCKQDDMSSARSDLFDSDSPHGVHSSLLDESDHSQDEEDNSSKSLLPESYFFPKLEDDDYSDPSANFEDHSFWSTSWPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10033102 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10006547 [exp]	7.5	0.7996
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10034154 [exp]	26.7	0.7670
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10022675 [exp]	29.5	0.8124
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10007495 [exp]	38.0	0.8137
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	38.2	0.8210
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10022009 [exp]	42.8	0.7979
AT1G11770			FAD-binding Berberine family p...		Lus10023365 [exp]	53.5	0.7931
AT5G55530			Calcium-dependent lipid-bindin...		Lus10032578 [exp]	56.2	0.7197
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10036574 [exp]	60.8	0.7542
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10024608 [exp]	69.7	0.7530

Compare expression of checked genes

Lus10033102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.