Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62720 224 / 3e-73 Integral membrane HPP family protein (.1.2) AT3G47980 219 / 2e-71 Integral membrane HPP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036673 [exp] 358 / 6e-126 AT5G62720 258 / 3e-87 Integral membrane HPP family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065500 [exp] 249 / 4e-83 AT5G62720 278 / 8e-95 Integral membrane HPP family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF04982 [flax] [poplar] HPP HPP family
Representative CDS sequence Show only first row Show all	>Lus10033103 pacid=23177046 polypeptide=Lus10033103 locus=Lus10033103.g ID=Lus10033103.BGIv1.0 annot-version=v1.0 ATGGCCACTCGTCATTTACTCCAATATCACAATGGCTGCTCCTCCTCCTCCTATTTCCATCATTTCGCGCCGCAAACCTCCTCCATTATTTCTCCTCGTC CAGCAACATTACAGGTACTCTTGTCCAGGAAAGGTAGTATCAATGGACGTCGGCGGGTAAGGAGTGGGAGTCAGACTACGCGGGTGGTGGCGGCGGCAGG GAACAATAATAATGCGGCAGTAGATCCCTTGTGGTGGGACGCGTGGAAGCCTGATGATAACTCTGCTTCTCCTCCTATTTCCCTTAGCGACATCTTCTGG CCTTCTGCAGGAGCATTTGCGGCAATGGCGTTACTGGGGAAGGTGGATAAAATGCTAGCCCCAAAAGGAGTTTCAATCACAATTGCTCCCCTTGGTGCCG TCTGTGCCGTCCTCTTCTCAACTCCTTCATCCCCCGCTGCCCGGAAGTACAATATGTTCATGGCACAAATCGGTTGTGCGGCCATCGGGGTGTTGGCATT CTCATTGCTCGGTCCTGGATGGCTAGCTAGGAGCACTGCTCTTGCTGCCTCTATAGCTTTCATGATCTACACCCGATCCAATCACCCCCCAGCCGCCAGC TTGCCCCTTTTGTTTATTGATGGAACCAAGCTTCAGGGGTTGAATTACTGGTATGCTCTGTTCCCTGGCGCCGCTGGATGCCTCATCCTCTGTTTCCTTG TACGTTGGTTTTTCCTCTTTTTGCTCCTCTCAATCTTGATCGTAACTATTAATCAGTTTTCTTACTCTCTGTTGTGGAACCTTCTGAACTTTTGCAGCAA GAGATGGTGA
AA sequence Show only first row Show all	>Lus10033103 pacid=23177046 polypeptide=Lus10033103 locus=Lus10033103.g ID=Lus10033103.BGIv1.0 annot-version=v1.0 MATRHLLQYHNGCSSSSYFHHFAPQTSSIISPRPATLQVLLSRKGSINGRRRVRSGSQTTRVVAAAGNNNNAAVDPLWWDAWKPDDNSASPPISLSDIFW PSAGAFAAMALLGKVDKMLAPKGVSITIAPLGAVCAVLFSTPSSPAARKYNMFMAQIGCAAIGVLAFSLLGPGWLARSTALAASIAFMIYTRSNHPPAAS LPLLFIDGTKLQGLNYWYALFPGAAGCLILCFLVRWFFLFLLLSILIVTINQFSYSLLWNLLNFCSKRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62720			Integral membrane HPP family p...		Lus10033103 [exp]	0	1
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	1.0	0.8968
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	2.0	0.8195
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	3.9	0.8180
AT5G62720			Integral membrane HPP family p...		Lus10036673 [exp]	10.5	0.6836
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	15.6	0.7566
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10038911 [exp]	16.7	0.7333
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	21.8	0.7136
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	23.2	0.7057
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	23.5	0.7099
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10033610 [exp]	24.0	0.6901

Compare expression of checked genes

Lus10033103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.