Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62710 915 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G31420 593 / 0 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 563 / 0 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G16000 328 / 4e-104 NIK1 NSP-interacting kinase 1 (.1) AT5G45780 325 / 3e-103 Leucine-rich repeat protein kinase family protein (.1) AT2G23950 321 / 2e-101 Leucine-rich repeat protein kinase family protein (.1) AT1G78530 307 / 1e-99 Protein kinase superfamily protein (.1) AT5G07280 327 / 3e-99 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G25560 313 / 3e-98 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G65240 310 / 2e-97 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036672 [exp] 1197 / 0 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034753 [exp] 603 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033291 [exp] 512 / 2e-170 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10030591 [exp] 330 / 5e-105 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 328 / 2e-104 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 322 / 7e-102 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10007292 [exp] 320 / 2e-101 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 317 / 9e-100 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 317 / 2e-99 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071100 [exp] 1011 / 0 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 599 / 0 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105000 [exp] 587 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.005G083300 [exp] 358 / 8e-116 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 353 / 6e-114 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.017G108000 [exp] 333 / 3e-106 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.001G380800 [exp] 319 / 4e-104 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.004G108200 [exp] 326 / 2e-103 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.011G068700 [exp] 325 / 3e-103 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 320 / 2e-101 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033104 pacid=23176960 polypeptide=Lus10033104 locus=Lus10033104.g ID=Lus10033104.BGIv1.0 annot-version=v1.0 ATGGGTGTTCTTGGATTGGTGTTTGTTCTCATTTCTTCGGTAACCCTCCTCATCTCTCCGTCTGATGCTCTTTCTGAAGATGGTCTTACATTGTTGGAGC TGAAGGGAACATTGAATGACACTAATAACAAACTTGCAAACTGGCAAGCCACTGATGGATCTCCTTGTCAATGGACTGGTATTTCCTGCCATGCTAATGA AGACAGAGTTAGCTCTATAAACCTTCCTTACATGCAACTTGGAGGGATTATATCTTCTAGCATTGGGAAGCTGAGTAGGTTGCAGAGACTGGCACTTCAT CAGAATAGCTTACACGGAGTTATTCCAAATGAATTAACCAATTGTAGTGAACTCAGAGCACTGTACTTGAGAGCTAATTACCTGCAAGGAGGCATCCCTT CTAACATTGGGAACCTTTCCCATCTCAATATACTGGATTTGTCGAGCAATTCTCTCAAGGGTGCTATACCTTCATCTATTGGCAGACTTACACACTTGCG TCACTTGAACTTATCCACCAACTTCTTCTCTGGGGAAATACCTGACTTTGGAGCTCTAAGCACATTTGGGAATAGTTCGTTTCTTGGCAACTTGGATCTT TGTGGTAGACAAGTGCAAAAGCCATGTAGAACCTCACTCGGATTCCCTGTGGTGCTACCACATGCTGCTAGTGATGAAACATCAGTTCCAGTGAAACGTT CTTCTCATTCCATCAAAGGCCTGCTAATCGGTTTAATATCCGTCATGGGTTTGACAATCATTGTGCTCTTTGGTTGTCTCTGGATATGCTTGCTGTCCAA GAAGGAAAGAGCTGCTAAGAAATACACCCAAGTCAAGAAGCAAGTTCACAAGGATGCAAGCACAAAGCTTATTACTTTCCATGGTGATCTACCATACACG TCGTTTGAGATCATTGAGAAGCTCGAGTCTCTTGATGAGCATGACGTAGTAGGTTCTGGAGGATATGGTACTGTATATCGTATGGTCATGAATGACTGTG GAACATTTGCTGTAAAAAGGATTGACCGAGGTCGTGAAGGATCTGATCAAGTGTTTGAGAGGGAGTTAGAGATTCTGGGCAGCATCAAGCACATAAATTT GGTGAATCTGAGAGGTTACTGCAGGCTTCCTGCATCAAAGCTTCTTATCTATGACTATCTAGCTATGGGAAGTGTAGATGACTTCTTACACGGACAACCT GATCAAGATAAGCAGTTGAAGTGGAGCGCTCGTTTAAGAATAGCCTTGGGTTCTGCTCGTGGAATTGCATACCTGCACCATGACTGTTCACCGAAGATAG TCCATCGGGATATAAAATCCAGCAACATTCTCCTTGATGAGAATTTGGAACCTCATGTCTCAGATTTCGGCCTAGCCAAGCTGTTGGTTGATGAAGATGC ACATGTTACAACTGTAGTTGCTGGAACATTCGGTTATTTGGCACCAGAGTATCTACAGAGTGGGAGAGCCACTGAGAAGTCAGATGTGTATAGCTTTGGA GTTCTTTTGCTAGAGCTAGTGACTGGGAAAAGACCAACTGATCCAACATTTGTGAAAAGAGGCCTGAATGTTGTTGGATGGATGAATACATTACTGAAGG AGAGAAGGCTGGAGGATGTGGTGGATAAGAGATGCAATGATGCAGACATGGAAGTCGTTGAAGCAGTGCTAGAGATTGCAGCAAGGTGCACGGATGCAAA CCCTGATGATCGGCCAACAATGAACCAAGTTCAGCAGTTGCTTGAGCAGGAAGTAATGTCCCCTTGCCCAAGTGAAATGTACGAGTCTCAATCAGACTAT TGCTGA
AA sequence Show only first row Show all	>Lus10033104 pacid=23176960 polypeptide=Lus10033104 locus=Lus10033104.g ID=Lus10033104.BGIv1.0 annot-version=v1.0 MGVLGLVFVLISSVTLLISPSDALSEDGLTLLELKGTLNDTNNKLANWQATDGSPCQWTGISCHANEDRVSSINLPYMQLGGIISSSIGKLSRLQRLALH QNSLHGVIPNELTNCSELRALYLRANYLQGGIPSNIGNLSHLNILDLSSNSLKGAIPSSIGRLTHLRHLNLSTNFFSGEIPDFGALSTFGNSSFLGNLDL CGRQVQKPCRTSLGFPVVLPHAASDETSVPVKRSSHSIKGLLIGLISVMGLTIIVLFGCLWICLLSKKERAAKKYTQVKKQVHKDASTKLITFHGDLPYT SFEIIEKLESLDEHDVVGSGGYGTVYRMVMNDCGTFAVKRIDRGREGSDQVFERELEILGSIKHINLVNLRGYCRLPASKLLIYDYLAMGSVDDFLHGQP DQDKQLKWSARLRIALGSARGIAYLHHDCSPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFG VLLLELVTGKRPTDPTFVKRGLNVVGWMNTLLKERRLEDVVDKRCNDADMEVVEAVLEIAARCTDANPDDRPTMNQVQQLLEQEVMSPCPSEMYESQSDY C

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	0	1
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	1.4	0.9641
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	2.0	0.9494
AT4G37130			hydroxyproline-rich glycoprote...		Lus10022470 [exp]	2.8	0.9413
AT1G71760			unknown protein		Lus10030260 [exp]	3.9	0.9464
AT3G19300			Protein kinase superfamily pro...		Lus10014071 [exp]	6.0	0.9400
AT4G10890			unknown protein		Lus10001812 [exp]	8.9	0.9393
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	10.6	0.9095
AT5G62710			Leucine-rich repeat protein ki...		Lus10036672 [exp]	10.7	0.9318
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	12.7	0.9231
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	13.0	0.9369

Compare expression of checked genes

Lus10033104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.