Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32440 303 / 9e-98 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G05160 301 / 4e-97 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT5G45340 262 / 3e-82 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 256 / 8e-80 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 250 / 2e-77 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G19270 235 / 1e-71 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT3G13730 229 / 2e-69 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G30180 223 / 5e-67 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT1G19630 221 / 1e-66 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT5G05690 216 / 2e-64 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036671 [exp] 872 / 0 AT1G05160 284 / 1e-90 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036670 [exp] 595 / 0 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10043357 [exp] 281 / 4e-89 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) Lus10033308 [exp] 247 / 4e-76 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 246 / 7e-76 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10021725 [exp] 238 / 4e-73 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 238 / 1e-72 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 233 / 4e-71 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10019513 [exp] 233 / 6e-71 AT1G05160 540 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071300 [exp] 566 / 0 AT1G05160 285 / 9e-91 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.012G071200 [exp] 414 / 2e-142 AT1G05160 181 / 3e-52 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G179100 [exp] 300 / 3e-96 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 290 / 8e-93 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G029100 [exp] 244 / 3e-75 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 238 / 6e-73 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.004G235400 [exp] 237 / 2e-72 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.001G242600 [exp] 234 / 2e-71 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G060700 [exp] 231 / 5e-70 AT2G42850 582 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Potri.002G126100 [exp] 230 / 7e-70 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10033105 pacid=23176963 polypeptide=Lus10033105 locus=Lus10033105.g ID=Lus10033105.BGIv1.0 annot-version=v1.0 ATGATTCTTCCATGGTGGATTCTCTGCTTGATCCCGCTAGCACTGGGATGTTGGTGGTGGAATGAGCTCCGGTACGCAGCTCCGGCCAAACTCCGTCTGA TCGGTACGGGGAAGAAGCTTCCGCCAGGCCACATGGGTCTCCCCTTCATCGGAGAACTCATTCCCTTCCTTTGGTACTTCAAGTTCCTCCGCCGCCCAGA CGATTTTATCAACTCAAAGCGACACAAATACGGAGATGGGGTGGGACTGTACAGAACCTACTTACTGGGGCAGCCATCGATCATCGCCTGTACAGCGGAA AGCAGTAGGTTTGTCCTCCAATCCGACGACGCCTTCTGCCTCCAGCGATGGCCCACCAACGACCTCGTCGGCCACCACTCTTTGTCAGCGGCGTTGGGCC CCAGCCACAAACGCCTCCGTAATTTTGTATCGGTGGCCGTCAACCAGCCGAATGCTCTCCGTAGATCCGTCGTCCTCAGCCAGCCCATCATCGCCGCATC GCTCCGCTCCTGGGCAGACCGAGGAACTGTCACTGTTCATACTGAAGCCAAAAACATGACATTTGAGAGCATAGGGAAACTGTTTGTGAGCTTTGAGCCA GGGCCTGTTATGGAACAGTTGGACCTTTACTTTGGGGGAATGATGAAAGGAATGAGGGCTACTCCTATCAATCTCCCTGGGACTCCATTCCACCACGCAC TTAAGTGTAGGAAGAGGTTGGAGGCAGTGTTCAGAGGAGAGCTGGAGAAGAGGAAGCAGAAGAAGAGAAATCTGAAGGAAGAGGAGGAGGAGGGAAAAGA TCTAATGGATGGATTGATGCAAGTTAGGGATGAGAATGGTGATTTGTTGAGCGACGAAGAAGTAGTGGATAACATCGCCAGCCTTGTTGTTGGCGGCTAT GATTCAACCGCCCTTTCTTCCATGTGGGCTGTCTATTGTCTGGCTAAGTATCCGGACGTACTCCGCAAACTTCGGGAGGAGAACATGGTTCTGAAGAAGG AGAAAAGTGATGGGGAGTTTATAACGTACGACGATATCTCCAGACTCAAGTACACAAAAAAGGTGGTGGAGGAAGTAGTAAGAATGGCGAATGTCTCTGT TTTTGCCTTCCGTTTAAGTGATAGAGACGTCGAGTTTCAAGGCCATGTTATTCCGAAAGGGTGGAAGGTGTTGTGCTGGCTTCGATACGTTCACACAGAT TCAAGGAACTTCGAGGATCCACTCTGTTTCAACCCTGACAGATATGATGGAGGAGGAAAGCCAAGTGGGTTTCAAGTGTTTGGAGCAGGAACAAGGATAT GCGTAGCAAACATGTTCGCCAGGACCCATCTTGCCATCTTTCTTCACCACCTATCTACCGGATACCAGTGGGAATTAGTAAATCCGAACGCAGGGATTGA TTATCTGCCTCATCAAAGACCAGCCGATGGAGTCGAGATTTCCATCACCAAACTTTGA
AA sequence Show only first row Show all	>Lus10033105 pacid=23176963 polypeptide=Lus10033105 locus=Lus10033105.g ID=Lus10033105.BGIv1.0 annot-version=v1.0 MILPWWILCLIPLALGCWWWNELRYAAPAKLRLIGTGKKLPPGHMGLPFIGELIPFLWYFKFLRRPDDFINSKRHKYGDGVGLYRTYLLGQPSIIACTAE SSRFVLQSDDAFCLQRWPTNDLVGHHSLSAALGPSHKRLRNFVSVAVNQPNALRRSVVLSQPIIAASLRSWADRGTVTVHTEAKNMTFESIGKLFVSFEP GPVMEQLDLYFGGMMKGMRATPINLPGTPFHHALKCRKRLEAVFRGELEKRKQKKRNLKEEEEEGKDLMDGLMQVRDENGDLLSDEEVVDNIASLVVGGY DSTALSSMWAVYCLAKYPDVLRKLREENMVLKKEKSDGEFITYDDISRLKYTKKVVEEVVRMANVSVFAFRLSDRDVEFQGHVIPKGWKVLCWLRYVHTD SRNFEDPLCFNPDRYDGGGKPSGFQVFGAGTRICVANMFARTHLAIFLHHLSTGYQWELVNPNAGIDYLPHQRPADGVEISITKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	0	1
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	1.7	0.8565
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042928 [exp]	2.6	0.8155
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042927 [exp]	4.5	0.8508
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	6.2	0.8383
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10014408 [exp]	8.1	0.7887
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	8.7	0.8292
AT5G02090			unknown protein		Lus10024357 [exp]	9.8	0.8366
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	11.8	0.7701
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	12.6	0.8053
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	13.0	0.8154

Compare expression of checked genes

Lus10033105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.