Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62680 640 / 0 Major facilitator superfamily protein (.1) AT3G47960 619 / 0 Major facilitator superfamily protein (.1) AT1G18880 615 / 0 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G69870 423 / 5e-141 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 349 / 6e-113 NRT1.6 nitrate transporter 1.6 (.1) AT1G68570 341 / 1e-109 Major facilitator superfamily protein (.1) AT1G69860 336 / 5e-108 Major facilitator superfamily protein (.1) AT3G54140 333 / 1e-106 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G28470 332 / 2e-106 Major facilitator superfamily protein (.1) AT5G01180 326 / 5e-104 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036669 [exp] 1002 / 0 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 608 / 0 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10037221 [exp] 403 / 7e-133 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 399 / 3e-131 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10042182 [exp] 345 / 4e-111 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10024345 [exp] 345 / 4e-111 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 339 / 2e-108 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 333 / 3e-106 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 332 / 1e-105 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071500 [exp] 735 / 0 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.001G351200 [exp] 612 / 0 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 602 / 0 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 582 / 0 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 418 / 3e-139 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.010G126300 [exp] 348 / 2e-112 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 347 / 1e-111 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G091600 [exp] 335 / 2e-107 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.006G034000 [exp] 335 / 4e-107 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 333 / 1e-106 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10033106 pacid=23176967 polypeptide=Lus10033106 locus=Lus10033106.g ID=Lus10033106.BGIv1.0 annot-version=v1.0 ATGGCATCTGACACTAACGGCAATCATTCTACGCAGAAATCATCAGCCATGGAGATTGTTGATAAGCAACATGAAGAAGAAGAAGAAGAAGAAGAAGAAG AAAAAAGGCCCATTTACAGAGGGTGGAAATCCATGCCCTTTATCATCGGAAATGAGACGTTCGAAAAGCTAGGAGCAATCGGCACACTATCCAACTTGCT CATATACCTCACCACAGTTTTCAACTTGTCCAACCTCAAAGCAGCTACCATCATCTCTGTTTTCAACGGCACTGCTAATTTCGGCACTCTCCTCGGTGCC TACATCTGCGACACTTTCCTCGGACGCTACAACACCTTGGCCGCCGCCTCCCTCGCTTCCTTCCTCGGACTACTTCTGATCCAGCTAACCGCCGCAATCC CAGGCCTTCACCCGCCGACATGCCGCAAATCCGACGCTACCTGCGAGGAACCTAAGATCGGGCAAATGGGTTTCCTCCTCACCGGATTCGCCCTCATGAT AGTCGGAGCAGGTGGTATCCGGCCCTGCAACTTGGCATTCGGGGCGGATCAGTTCGACCCGAATACAGAGTCAGGGAGGAGAGGAATCAACAGCTTCTTC AATTGGTACTTCTTCACTTTCACCTTTGCCAAGATGGTATCCGTTACTCTCATCGTCTACATCCAAGCCAATGTCAGCTGGTCCATCGGATTGGCCATTC CTGCCATCCTCATGCTCGTTTCCTGTGCTCTCTTCTTCGCCGGTACCAAGCTCTACGTCATCGTTAAAGCTAGTGGCAGCCCTGTCACTAGCCTTGTTCA GGTGTTTGTGGTTGCCATCAAGAAGAGAAAACTCAGGAAACTTGAGCAGCCGTGGCATTCGCTTTTTAATTACTTCCCTAGCAAGTCCATCAACAAACGC CTCACTTACACCCACCAATTAACGTGGTTGGACAATGCAGCAATTGTGACACCCAGTGACAAAATCAACGCCGACGGGTCGACAACGAACCCGTGGCAAC TATGCAGCTTACAGCAAGTAGAAGAAGTGAAATGCGTGGTGAAAGTGCTACCCATATGGCTATCTGGAATAATTTACCATCTTGCTCTCGGGCAACAGAA CACCTATGCAGTTTTCCAAGCAAATCAAGCAGACAGGCGCCTCGGGAACACCAACTTCCAAATCCCCGCAGCCACCTACGTGGTCTTCCTAATGCTCAGC CTAACGGCTTTCATCCCTATCTACGACCGGATTTTGGTCCCCTCCTTGAGAAGAATGACCGGGAAAGAAGGAGGGATCACCGTACTCCAAAGGTTAGGGA TCGGAATCATAATATCCATCCTGACAATGCTAGTTTCGGGTTTGGTGGAAGAGCGACGCAGACATATCGCTCTCACTAGCCCGACAATGGGAATGGCTCC CGGGAGGGGAGCAATTTCTGCAATGTCGGCATTCTGGCTGGTACCGCAATTTATATTGGCTGGAGTAGCGGAGGTGTTCGGCGCGGTGGGGCAAGTCGAG TTCTACTACAAGCAGTTTCCGGAGAATATGAGAAGCGTGGCCGGGGCATTGAATTACTGTGGGATGGCGGGTGCGAGTTACCTTAGTACATTGTTGATAC AAGTGGTTCATAAGACAACGGAGGGAGCGGCTACGGGGAATTGGTTGCCTGAGGATTTGAATAAAGGGAGGTTGGATTACTACTATTACCTTGTTGGTGG ATTGGGGGTTTTAAATTTTGGTTATTTTTTGTGGTGTTCAAGAGGGTATCAGTATAAGAAAGATAAGGACGATTCGGTTGAACTGAATGATCAAGAGATG GATGAGAAATCCGAAAAAGTATAA
AA sequence Show only first row Show all	>Lus10033106 pacid=23176967 polypeptide=Lus10033106 locus=Lus10033106.g ID=Lus10033106.BGIv1.0 annot-version=v1.0 MASDTNGNHSTQKSSAMEIVDKQHEEEEEEEEEEKRPIYRGWKSMPFIIGNETFEKLGAIGTLSNLLIYLTTVFNLSNLKAATIISVFNGTANFGTLLGA YICDTFLGRYNTLAAASLASFLGLLLIQLTAAIPGLHPPTCRKSDATCEEPKIGQMGFLLTGFALMIVGAGGIRPCNLAFGADQFDPNTESGRRGINSFF NWYFFTFTFAKMVSVTLIVYIQANVSWSIGLAIPAILMLVSCALFFAGTKLYVIVKASGSPVTSLVQVFVVAIKKRKLRKLEQPWHSLFNYFPSKSINKR LTYTHQLTWLDNAAIVTPSDKINADGSTTNPWQLCSLQQVEEVKCVVKVLPIWLSGIIYHLALGQQNTYAVFQANQADRRLGNTNFQIPAATYVVFLMLS LTAFIPIYDRILVPSLRRMTGKEGGITVLQRLGIGIIISILTMLVSGLVEERRRHIALTSPTMGMAPGRGAISAMSAFWLVPQFILAGVAEVFGAVGQVE FYYKQFPENMRSVAGALNYCGMAGASYLSTLLIQVVHKTTEGAATGNWLPEDLNKGRLDYYYYLVGGLGVLNFGYFLWCSRGYQYKKDKDDSVELNDQEM DEKSEKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62680			Major facilitator superfamily ...		Lus10033106 [exp]	0	1
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	4.4	0.9320
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10038025 [exp]	6.2	0.8906
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	7.1	0.9222
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10017002 [exp]	7.7	0.9105
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	7.9	0.9234
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	11.1	0.9206
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	15.9	0.9105
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002703 [exp]	17.3	0.8976
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	20.1	0.9135
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	21.8	0.9087

Compare expression of checked genes

Lus10033106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.