Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74740 588 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT1G18890 583 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT3G51850 516 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT5G12480 502 / 2e-176 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 496 / 1e-173 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 483 / 7e-169 CPK14 calcium-dependent protein kinase 14 (.1.2) AT5G19450 482 / 3e-168 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT2G31500 434 / 1e-148 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 431 / 3e-148 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 422 / 7e-145 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036667 [exp] 673 / 0 AT1G18890 804 / 0.0 calcium-dependent protein kinase 1 (.1) Lus10008631 [exp] 602 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10004807 [exp] 514 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 510 / 2e-179 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 509 / 4e-179 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027361 [exp] 493 / 1e-172 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 489 / 3e-171 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10042185 [exp] 484 / 1e-170 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10009947 [exp] 477 / 4e-166 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071700 [exp] 622 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.015G066200 [exp] 615 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 517 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.016G054600 [exp] 509 / 5e-179 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G101300 [exp] 506 / 4e-178 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.009G052700 [exp] 494 / 4e-173 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.001G257100 [exp] 489 / 4e-171 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.006G052900 [exp] 471 / 5e-164 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.007G127000 [exp] 442 / 1e-152 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.010G244800 [exp] 420 / 2e-143 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10033108 pacid=23177035 polypeptide=Lus10033108 locus=Lus10033108.g ID=Lus10033108.BGIv1.0 annot-version=v1.0 ATGGGCAACTGCAACACCTGCGTGAGACCGGATGACGACCAAAAATCCAAGAAGAAACCAGCCAAGGAGAGGAAACCCAACAACCCCTTCTCCGGAGATC CGACCCAATTCACGGCCCCCATCCGGGTCCTGAAGGACTTGGTCCCGCCAACCCAACAGCAGCACCAGCGGCCGCGGATCGGAGACAAGTACATCCTCGG CAGGGAATTGGGCAGAGGAGAATTCGGGATTACCTATCTGTGCACCGACAGGGAGACGAAGGAGGCGCTGGCTTGCAAGTCCATTTCCAAGCGGAAGCTC CGGACGGCGGTGGACATAGAGGATGTGAGGAGGGAAGTGGCAATCATGTCCAGCTTGCCCCAACACCCCAACATCGTAAAGCTGAGGGCTACTTACGAGG ACGACGAGAACGTTCACTTGGTGATGGAGCTCTGTGAAGGAGGGGAGCTGTTTGACCGGATTGTGGCGAGAGGGCATTACAGCGAGCGAGCTGCTGCCAC CGTCGCCAGGACGATTATGGAGGTGGTCAGGATGTGCCATGAGAATGGGGTTATGCACAGGGATCTTAAGCCTGAGAACTTCTTGTTTGCTAATAAAAAG GAGAATTCTCCTCTCAAGGCCATCGATTTTGGGCTCTCCATCTTCTTTGACCCTGGGGAGAAATTTACTGAGATTGTTGGGAGTCCGTATTACATGGCAC CAGAGGTGTTGAAGAGGAATTATGGACCAGAGATAGATGTGTGGAGTGCTGGAGTTATACTCTACATTCTTCTATGTGGGGTTCCTCCATTTTGGGCAGA ATCGGAGAAGGGTGTTGCCCATGCAATTTTGAGGGGAGTGCTTAATTTCAAGAGGGAGCCATGGCCACAGATTTCTGAAAGTGCCAAGAGTCTTGTTCGC CAAATGTTGGAACCTGATCCTTCCAAGCGCTTAACTGCTCAGCAGGTGCTAGGCAACGTAACATATGAAGAGTTGAGGGCTGGTCTTCGGAAGGTCGGTT CACAGTTGGCTGAACCAGAGATCAAGATGCTGATGGAAGTGGCTGACGTTGATGGAAATGGTATATTGGACTATGGAGAGTTTGTAGCAGTTACAATTCA CCTGCAGAAGATGGAGAATGACGAGCACTTCCGGAGGGCATTTATGTATTTTGATAAGGATGGAAGTGGGTATATTGAGCTAGACGAGCTACGACAGGCC ATGGCTGAAGTAAACGGTTAA
AA sequence Show only first row Show all	>Lus10033108 pacid=23177035 polypeptide=Lus10033108 locus=Lus10033108.g ID=Lus10033108.BGIv1.0 annot-version=v1.0 MGNCNTCVRPDDDQKSKKKPAKERKPNNPFSGDPTQFTAPIRVLKDLVPPTQQQHQRPRIGDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKL RTAVDIEDVRREVAIMSSLPQHPNIVKLRATYEDDENVHLVMELCEGGELFDRIVARGHYSERAAATVARTIMEVVRMCHENGVMHRDLKPENFLFANKK ENSPLKAIDFGLSIFFDPGEKFTEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEKGVAHAILRGVLNFKREPWPQISESAKSLVR QMLEPDPSKRLTAQQVLGNVTYEELRAGLRKVGSQLAEPEIKMLMEVADVDGNGILDYGEFVAVTIHLQKMENDEHFRRAFMYFDKDGSGYIELDELRQA MAEVNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10033108 [exp]	0	1
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	2.4	0.8928
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10033107 [exp]	3.5	0.9209
AT1G18890		CPK10, ATCDPK1,...	calcium-dependent protein kina...		Lus10036667 [exp]	6.6	0.8365
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	26.2	0.8412
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	29.0	0.8730
AT5G36160			Tyrosine transaminase family p...		Lus10033661 [exp]	36.2	0.8683
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023024 [exp]	37.0	0.8607
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	38.5	0.8691
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	41.2	0.8684
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	49.4	0.7886

Compare expression of checked genes

Lus10033108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.