Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36320 419 / 1e-144 unknown protein AT4G37920 258 / 7e-82 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036666 [exp] 776 / 0 AT1G36320 442 / 5e-154 unknown protein Lus10029560 [exp] 261 / 4e-83 AT4G37920 515 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G091000 [exp] 504 / 4e-178 AT1G36320 481 / 3e-169 unknown protein Potri.005G170400 [exp] 502 / 3e-177 AT1G36320 469 / 2e-164 unknown protein Potri.007G000400 [exp] 255 / 2e-80 AT4G37920 551 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033109 pacid=23177019 polypeptide=Lus10033109 locus=Lus10033109.g ID=Lus10033109.BGIv1.0 annot-version=v1.0 ATGGCTGAATTAGCGTCTTGTACCAAAATTTCGAGTTGTTGCCCTTTATCTTCAACTCCTTCCATGATCAGTCCTCCAGCACAGGCAGCTCCCTCTTTCT TTTACTTTGGACCTTCCCCTCAGAATCTCAATGCTTCTCCTCGCTTCAAAGCGTACTTGGCAGTGAATGCGGCCAGGTTGCGGAGATTCCCTATGGTTTC TGTTGCTCGTAATGCAGCAACGGTTCCTGGCAATGGTAAGGGAGAGAAATTGCTATTCTCTGATTCTTCCCAACTTGATTTTGGCAATGATGAGCCTGAA GAAGCGGGGAAGGAAAAGGAGGGTAAAGATATATTGGATCGTGATGATGAAGTTCGAATGTTTCGAGTGTGTGACAAGCTAATTGAAGTCTTCACGGTTG ACATGCCCTCACCAACTGATTGGAGAAGGTTGCTCGCGTTTAGCAGGGAATGGGACAGCATCCGGCCTCATTTCTTCAAGCGTTGCCATGACCGAGCAGA TGATGAGTCTGACCCTGGGAAGAAGCATAATTTACTCAAGCTTTCAAGGAAGCTCAAAGAGGTTGATGAAGATGTGCAACGTCATAATGAACTTCTCGCA GCAATCAGGAAGGCGCCATCCGAGCTATGTGAGATTGTTGCTAGGCGGCGGAAGGATTTCACAGAAGAATTTTTTGTACATTTATTTGCTGTGGCAAAAT CTTATCATGATGACAGAACTGAGCAAAACGCTTTGGAGAAGCTGGGAAATGACTGTTTAGCTGTTGTACAAGCCTATGACAGTATAGCCGAGGAGACGGA AGCATTAACTACTGCAGAGTTGAAGTTGCAAGATATTATCAATTCTCCTTCTTTGGATGCTGCTTGCTGGAAAATAGACAATTTGGCACAAAAAAATCAA CTTGATTCAGCGTTGGTATTGTTGATATCTAAAGCCTGGTCAGATGCTAAGGAGACCAACATGACTAAAGATGAGGCAAAAGAGATACTGTATCATCTGT ATAAGACATCAATGGAAAATATTCAAAGATCGATGCCAAAGGACGTAAGAATCGCAAAGCACCTTCTCACAATTCAAGATCCTAAGGAACGACTATGTGC CTTAAATGATGCATTTAGTCCCCCGGAAAAACTTGAAGAAAACAACGAGGATTGCCTCTACACGACTCCGGAAAAGCTCCATAGCTGGATGAAGACAGTG GTGGATGCTTACCATCAGAGTGAGGAGGGCACTATGCTAAGGGAAGGTAGGGATCTGATGAACCCTGATACAATTGTAAAGCTGGAGGAACTGATTAAGG TAGTGCAAGATCATTTCATGTGA
AA sequence Show only first row Show all	>Lus10033109 pacid=23177019 polypeptide=Lus10033109 locus=Lus10033109.g ID=Lus10033109.BGIv1.0 annot-version=v1.0 MAELASCTKISSCCPLSSTPSMISPPAQAAPSFFYFGPSPQNLNASPRFKAYLAVNAARLRRFPMVSVARNAATVPGNGKGEKLLFSDSSQLDFGNDEPE EAGKEKEGKDILDRDDEVRMFRVCDKLIEVFTVDMPSPTDWRRLLAFSREWDSIRPHFFKRCHDRADDESDPGKKHNLLKLSRKLKEVDEDVQRHNELLA AIRKAPSELCEIVARRRKDFTEEFFVHLFAVAKSYHDDRTEQNALEKLGNDCLAVVQAYDSIAEETEALTTAELKLQDIINSPSLDAACWKIDNLAQKNQ LDSALVLLISKAWSDAKETNMTKDEAKEILYHLYKTSMENIQRSMPKDVRIAKHLLTIQDPKERLCALNDAFSPPEKLEENNEDCLYTTPEKLHSWMKTV VDAYHQSEEGTMLREGRDLMNPDTIVKLEELIKVVQDHFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36320			unknown protein		Lus10033109 [exp]	0	1
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	1.0	0.8795
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	2.0	0.8760
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	2.2	0.8600
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	4.6	0.8516
AT1G73090			unknown protein		Lus10037331 [exp]	5.8	0.8237
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	8.8	0.8389
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	11.9	0.8670
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	12.0	0.8429
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	12.0	0.8313
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Lus10030698 [exp]	12.8	0.7858

Compare expression of checked genes

Lus10033109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.