Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18900 1043 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 1013 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 182 / 3e-47 GUN1 genomes uncoupled 1 (.1) AT5G46580 180 / 3e-47 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G35130 172 / 3e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G79490 172 / 3e-44 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 169 / 7e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 169 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 166 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 165 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004555 [exp] 186 / 3e-49 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000897 [exp] 182 / 8e-48 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10037517 [exp] 176 / 2e-45 AT1G79490 1299 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037515 [exp] 176 / 2e-45 AT1G79490 1296 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002871 [exp] 174 / 9e-45 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022290 [exp] 172 / 1e-44 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10003657 [exp] 170 / 7e-44 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10013894 [exp] 169 / 7e-43 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 168 / 7e-43 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066400 [exp] 1169 / 0 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.005G046000 [exp] 187 / 1e-49 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 182 / 1e-48 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G123600 [exp] 180 / 7e-48 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G193900 [exp] 183 / 1e-47 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.014G118500 [exp] 182 / 3e-47 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.010G173400 [exp] 181 / 3e-47 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 177 / 5e-47 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 175 / 5e-46 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G180000 [exp] 175 / 7e-46 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033110 pacid=23177017 polypeptide=Lus10033110 locus=Lus10033110.g ID=Lus10033110.BGIv1.0 annot-version=v1.0 ATGATTCGAGCTAAGCAATTAAGTAATCTCTCCAGTACCGCTAGGTCTTTCTTCGTTGGTGGATCACGGTGCGGAGCTGTAGATGGCAGTTCATGCACTT GTTCTGAAGATGAAACTTGTAATTCCAAGGGTTTGCCAACAAGAAGCAACGGTCTACTTGCGCAAAAGGCATCCGCCTTAGCATCCAAAACGTTAGCAGG AGGGTTCGAAACTGCAACCTCAAGAGATGCTGCTGTTAAATTGTTGGGTTCACAGAAAGGTGATAATGTAAAGGCTATAAATGCTCTCCCGCAGATTGTT TCTACTACACCTAGTTCCTTTGTAAAGGCTGACGGTGCCACTTATGTGAGAGATGTTGATTCCGTAGAAAATGGATTTCCACATTCTTCACCGCCTGTGT CTGACCAATTTATGAAAGTTGGTATGGCTGCAGTGGGGTTTCTCTCTGATATTGTTAACTACAAGATTCCTACTATGTCAGATGGAAGCGGACTAAGTTT GCCTCAGAACTGTGTGGTCGATTCCACCATGTCTTGCTCCGATGTAAAATCAGCTCACGTGAAACATATAAGGGCTGAGCACTTTTCAAAAGTTTATCCC AAATCTTCAGAAGTTACAGTGCGGTCAAGCACCACCAGCAACTCCTCACGTGCAAAGGGTAAAGGTGAGAACGCTACTTCTGTTAAGGGTTTCAAACAAG GTTCTGGTGGTTCAGTAGGAACTAATTATGCATCGTCTGAAGCTTATGGCCAAAAGAAGACCACAAATCAGAGGTCAAGGACTCAGCCAAATATTGCTTT ACCAAATACCAATGCAACTGTAAAGAATTCTGATGGAAAAGTGGGGCACCACTTCTCATCAGGGTACAGAAAGGCTTATAAAGATGATAGGGTGCCAACT TCAATGGCTTCAATGGTCCGGCATTCCTCAGGTGCTGGACATGTTGAAAACGTTTGCTGCATATTGAGACAGCTGGGATGGAATCCTGCAGCAGAGGAGG CTCTTGGGAATCTTGATTGTTTGATGGATGCATATCAAGCGAACCAAGTTCTGAAGCAGCTTCAGGATCATAAAGTGGCTCTTGGTTTCTTCAATTGGTT GAAACGGAAACCTGGGTTCAAGCATGATGGTCATACTTATACAACTATGGTGGGGGTCCTTGGACGTGCAAAGCAATTTGCTTCAATTAACAAGTTGCTT GATCAGATGGTGAGGGACGGATGCCAGCCAAATGTTGTGACATATAACCGGCTCATTCACAGTTACGGGAGAGCAAATTATCTGAACGAAGCAGTTGATG TTTTCAATCAAATGCAAAAGGATGGATGTGAACCTGATCGTGTGACTTACTGCACCCTTATAGATATACATGCCAAAGCTGGCTATCTTGACTTTGCCAT GGATATGTATGAAAAGATGCAAGCAGCTGGACTTGCTCCGGACACATTTACTTATAGTGTTATGATAAACTGCCTCGGAAAAGCCGGGCATTTAGCTGCT GCAGATAAGCTGTTTTCTGAGATGGTTGAACATGGATGTACTCCTAATTTAGTGACCTACAATGTCATGATTGCATTGCAGGCAAAGTCTAGGAATTACG AAAATGCACTGCAGCTGTACCGAGATATGCAGAATGCAGGGTTTGAACCTGACAAAGTAACATATAGTATAGTTATGGAGGCACTTGGACACCTGGGATA CCTTGAAGAAGCGGAGGCAGTTTTCTCCGAAATGAAACAGAGAAACTGGGTGCCGGATGAGCCTGTCTATGGTCTGCTAGTTGACTTGTGGGGGAAAGCT GGGAATGTTGAGAAAGCACGGGGTTGGTATGAAACTATGATTCGCACTGGTCTGCGACCAAATGTGCCCACTTGCAATTCCCTGCTTAGTGCATTCTTGA GAGTGCACCTACTTGCTGATGCATATAGTTTACTCGAAAGCATGCTTGCCTTGGGATTGGCCCCATCTCTTCGCACTTACACCTTACTTCTCAGTTGCTG TACTGAGGCACCTTTGCCTTATGACATGAGATTCTGGTGGGACATTATGGAAACGACAGGACATCCTGTGCATGCGTTTCTGAAATCGATGCCATATGCA GGAGCTGATGGTCAGAACATAAGGGATCACGTAGGGAGGTTTTTCGATGTGATGCGGAGCGAGGACAGAGAGAGCAAGAGGGGACTTGTGGATTCCGTGG TGGATTTCCTTCACAAGTCAGGGCTGAAGGAAGAGGCTGCCTTAGTATGGGAGGTAGCTGCTGAAAAGAACGTATACCCAGATGCAGTGCGGGAGAAAAG CTCCTGCTATTGGCTGATTAACCTGCATGTGATGTCTGATGGCACTGCGGTCACAGCTCTGTCGAGGACACTTGCTTGGTTCCGGCGTGAAATGCTGGAG TCTGGAGTTAGCCCAAGTCGTATTGATATAGTTACAGGGTGGGGGAGACGGAGCAAGGTGACGGGAGCTTCGATGGTGAGGCAGGCGGTGCAGGAGTTGC TGAATATGTTCAGTTTCCCATTTTTCATACTGAATGGAAACACAGGTTGCTTTGTAGGGAGCGGGGAGCCGCTGAATAATTGGCTGCTACATCCTTATGT AGAGCGGATGCATTTATTGTAA
AA sequence Show only first row Show all	>Lus10033110 pacid=23177017 polypeptide=Lus10033110 locus=Lus10033110.g ID=Lus10033110.BGIv1.0 annot-version=v1.0 MIRAKQLSNLSSTARSFFVGGSRCGAVDGSSCTCSEDETCNSKGLPTRSNGLLAQKASALASKTLAGGFETATSRDAAVKLLGSQKGDNVKAINALPQIV STTPSSFVKADGATYVRDVDSVENGFPHSSPPVSDQFMKVGMAAVGFLSDIVNYKIPTMSDGSGLSLPQNCVVDSTMSCSDVKSAHVKHIRAEHFSKVYP KSSEVTVRSSTTSNSSRAKGKGENATSVKGFKQGSGGSVGTNYASSEAYGQKKTTNQRSRTQPNIALPNTNATVKNSDGKVGHHFSSGYRKAYKDDRVPT SMASMVRHSSGAGHVENVCCILRQLGWNPAAEEALGNLDCLMDAYQANQVLKQLQDHKVALGFFNWLKRKPGFKHDGHTYTTMVGVLGRAKQFASINKLL DQMVRDGCQPNVVTYNRLIHSYGRANYLNEAVDVFNQMQKDGCEPDRVTYCTLIDIHAKAGYLDFAMDMYEKMQAAGLAPDTFTYSVMINCLGKAGHLAA ADKLFSEMVEHGCTPNLVTYNVMIALQAKSRNYENALQLYRDMQNAGFEPDKVTYSIVMEALGHLGYLEEAEAVFSEMKQRNWVPDEPVYGLLVDLWGKA GNVEKARGWYETMIRTGLRPNVPTCNSLLSAFLRVHLLADAYSLLESMLALGLAPSLRTYTLLLSCCTEAPLPYDMRFWWDIMETTGHPVHAFLKSMPYA GADGQNIRDHVGRFFDVMRSEDRESKRGLVDSVVDFLHKSGLKEEAALVWEVAAEKNVYPDAVREKSSCYWLINLHVMSDGTAVTALSRTLAWFRREMLE SGVSPSRIDIVTGWGRRSKVTGASMVRQAVQELLNMFSFPFFILNGNTGCFVGSGEPLNNWLLHPYVERMHLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	0	1
					Lus10040444 [exp]	2.6	0.9657
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10022936 [exp]	3.2	0.9611
AT5G36160			Tyrosine transaminase family p...		Lus10033659 [exp]	4.9	0.9581
AT1G63810			unknown protein		Lus10014305 [exp]	9.0	0.9609
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	13.0	0.9572
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10024915 [exp]	14.8	0.9382
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10008170 [exp]	18.4	0.9438
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	19.4	0.9263
AT2G03820			nonsense-mediated mRNA decay N...		Lus10025109 [exp]	19.6	0.9177
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	21.8	0.9440

Compare expression of checked genes

Lus10033110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.