Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47870 182 / 3e-55 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT3G13850 113 / 3e-29 AS2 LBD22 LOB domain-containing protein 22 (.1) AT1G72980 108 / 4e-28 AS2 LBD7 LOB domain-containing protein 7 (.1) AT5G63090 104 / 8e-27 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 103 / 8e-27 AS2 LBD25 LOB domain-containing protein 25 (.1) AT5G66870 106 / 1e-26 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT1G31320 98 / 9e-25 AS2 LBD4 LOB domain-containing protein 4 (.1) AT2G30130 97 / 3e-24 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT2G30340 99 / 4e-24 AS2 LBD13 LOB domain-containing protein 13 (.1) AT2G28500 98 / 5e-24 AS2 LBD11 LOB domain-containing protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036665 [exp] 481 / 1e-172 AT3G47870 182 / 2e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10008629 [exp] 341 / 2e-117 AT3G47870 175 / 2e-52 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10042187 [exp] 150 / 4e-44 AT3G47870 47 / 4e-06 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10003789 [exp] 115 / 4e-30 AT3G13850 162 / 7e-49 LOB domain-containing protein 22 (.1) Lus10002513 [exp] 110 / 1e-28 AT3G13850 161 / 1e-48 LOB domain-containing protein 22 (.1) Lus10013510 [exp] 107 / 2e-27 AT3G13850 143 / 1e-41 LOB domain-containing protein 22 (.1) Lus10039940 [exp] 105 / 3e-27 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10031191 [exp] 104 / 3e-27 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10031769 [exp] 103 / 8e-27 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072000 [exp] 278 / 2e-93 AT3G47870 180 / 7e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.015G066700 [exp] 270 / 3e-90 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.003G039700 [exp] 119 / 1e-30 AT3G13850 184 / 6e-56 LOB domain-containing protein 22 (.1) Potri.001G196400 [exp] 112 / 5e-29 AT3G13850 184 / 3e-57 LOB domain-containing protein 22 (.1) Potri.005G097800 [exp] 104 / 3e-27 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.015G082200 [exp] 104 / 5e-27 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.007G066700 [exp] 103 / 5e-27 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.005G134900 [exp] 105 / 2e-26 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.007G039500 [exp] 105 / 2e-26 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.012G083500 [exp] 103 / 2e-26 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10033111 pacid=23177040 polypeptide=Lus10033111 locus=Lus10033111.g ID=Lus10033111.BGIv1.0 annot-version=v1.0 ATGACGTTGAACGGTGGCACAAGCCACGCCTGTGCAGCGTGCAAGTATCAGAGACGGAAGTGCACCTCCGAGTGTCAGCTTGCCCCTTACTTCCCTGCAA ACAGACCTGAAACCTTCAGGAATGCTCACAAGCTATTCGGCGTCAGGAACATCGTCAAGATACTCGAGAAACTGGACCACCACCAGCGCCAGGAGGCCAT GCAATCCATCATTTGGCAGGCTAACATCCGGGACATCTACCCTGTCCGCGGCTGCCTCGACTACATCTATGCCCTCCAATACAAGATTCACCAGGCCCAG GAGGAGCTCCATGCTGTCCACTCTCAGCTCCAGGTCTACCGCAATCAACAAGCTACGGATCGCCCTTTCCCCGAGGACGACATGGTAATTACTTCCTCCC ACCTGCAACTTGGGATGGCTCCTCCTCCTGCTGCAGCAGCCAATAGTAACGCCCTCTCCCTTTTCGGCCACCACAACGAACACCCTCCGGAACAAGTGGT GGCTCTCCAGTCCCCGGAACTCCAGCATTCCTACTGTATGAGCATCAATAATAATGTGGTGGGAGGAGGAGGCTACAGCTCTGGTTACTTGGATAACAAA GATAATGCAGTAGGTAATTCTTTCTGGCTTCACCATAATTATGGCATTAACAACGACGAGGTCATCAATTCTTCCAGCATGGGTCTTCAGTCTCAGTTGG TAGCAGCACCTAATCATCCACTGGGTATCCAGCAGGAATTGGTTCATGACTACAATGAGATGCATCCGTTTTTTGACACAATTGATGACAGGCAATCTTA CATTGACTCCACCAAAGAGGCTTATGATACAAGCTCGGAAGAGTCTATCAAGGACACAACGCAGTCCCTCGAACACATTGCGGAGAACGAGCTAAAAAGT GCGGCAGCATGCTTCAGCATCACCAGTGTCAACTGA
AA sequence Show only first row Show all	>Lus10033111 pacid=23177040 polypeptide=Lus10033111 locus=Lus10033111.g ID=Lus10033111.BGIv1.0 annot-version=v1.0 MTLNGGTSHACAACKYQRRKCTSECQLAPYFPANRPETFRNAHKLFGVRNIVKILEKLDHHQRQEAMQSIIWQANIRDIYPVRGCLDYIYALQYKIHQAQ EELHAVHSQLQVYRNQQATDRPFPEDDMVITSSHLQLGMAPPPAAAANSNALSLFGHHNEHPPEQVVALQSPELQHSYCMSINNNVVGGGGYSSGYLDNK DNAVGNSFWLHHNYGINNDEVINSSSMGLQSQLVAAPNHPLGIQQELVHDYNEMHPFFDTIDDRQSYIDSTKEAYDTSSEESIKDTTQSLEHIAENELKS AAACFSITSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10033111 [exp]	0	1
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10001336 [exp]	2.2	0.7655
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10036186 [exp]	4.7	0.7277
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	9.8	0.7713
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	25.2	0.7691
					Lus10043270 [exp]	37.9	0.7604
AT4G14600			Target SNARE coiled-coil domai...		Lus10036461 [exp]	40.5	0.6730
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	66.1	0.6932
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	69.0	0.7003
AT3G02920		ATRPA32B	Replication protein A, subunit...		Lus10015505 [exp]	71.6	0.6572
AT1G11410			S-locus lectin protein kinase ...		Lus10005053 [exp]	77.4	0.7071

Compare expression of checked genes

Lus10033111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.