Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74770 74 / 1e-15 zinc ion binding (.1) AT3G18290 70 / 2e-14 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G18910 70 / 3e-14 zinc ion binding;zinc ion binding (.1) AT3G62970 44 / 1e-05 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036664 [exp] 90 / 3e-24 AT3G18290 81 / 5e-20 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042188 [exp] 83 / 3e-20 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008628 [exp] 85 / 2e-19 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042190 [exp] 81 / 6e-18 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10005111 [exp] 71 / 9e-15 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10034346 [exp] 71 / 9e-15 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042189 [exp] 71 / 9e-15 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066600 [exp] 74 / 9e-16 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.008G123300 [exp] 69 / 6e-14 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.010G122200 [exp] 69 / 6e-14 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 69 / 7e-14 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.014G134400 [exp] 42 / 6e-05 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033112 pacid=23177026 polypeptide=Lus10033112 locus=Lus10033112.g ID=Lus10033112.BGIv1.0 annot-version=v1.0 ATGTTTAGACTGTGTCAAGGTCTCGATAGAGACAATAAGAAGAGGTGCAATAAAACAGCTGAAACCACAGATGAAAAGGAAAACACAGCTTCACCTTTCA AAGAAGCAATGAAATCTAGGAATCATGAATTCCTTTCATGGATCAGTCAAGATGATTTAGAGGCCCCGACACGAAGAATTTCTCGTGATTCCTCCATAGA TCCTCAAAAGAAATCTCATATGATCCAGAATCTGCTGATGAGGTCAAGAGCAGGGTTGGTCAGGTTTTTAACTATTAAGAGTAGACTAAATTTGAATTTT GGAAATAATTTTCCGGTGTACTTTAAGATGCTGGATGCCCTTATAGCGGAAGAAAAAACTCCAGAAGAATATGCAAGACAAACTCAGGAATTCCAGGCCA TTCTTTGCAATGATTGTGAGAAGAAAGGTGCTGCTGCACGCTTCCACTTGCTCTATCACAAGTGCCCAAATTGTGGACTGAATTTTATAACTCCTGCTCA ATAG
AA sequence Show only first row Show all	>Lus10033112 pacid=23177026 polypeptide=Lus10033112 locus=Lus10033112.g ID=Lus10033112.BGIv1.0 annot-version=v1.0 MFRLCQGLDRDNKKRCNKTAETTDEKENTASPFKEAMKSRNHEFLSWISQDDLEAPTRRISRDSSIDPQKKSHMIQNLLMRSRAGLVRFLTIKSRLNLNF GNNFPVYFKMLDALIAEEKTPEEYARQTQEFQAILCNDCEKKGAAARFHLLYHKCPNCGLNFITPAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18910			zinc ion binding;zinc ion bind...		Lus10033112 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	21.5	0.6515
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	28.3	0.6292
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	47.7	0.6142

Compare expression of checked genes

Lus10033112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.