Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74780 474 / 5e-163 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G18940 451 / 5e-154 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 436 / 3e-148 Major facilitator superfamily protein (.1) AT2G34350 434 / 1e-147 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G39210 139 / 7e-35 Major facilitator superfamily protein (.1) AT2G28120 137 / 2e-34 Major facilitator superfamily protein (.1) AT5G14120 124 / 4e-30 Major facilitator superfamily protein (.1) AT3G01930 121 / 4e-29 Major facilitator superfamily protein (.1.2) AT5G50630 114 / 8e-27 Major facilitator superfamily protein (.1) AT5G50520 114 / 8e-27 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036663 [exp] 619 / 0 AT1G74780 520 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10042170 [exp] 422 / 1e-142 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10014640 [exp] 143 / 2e-36 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 139 / 3e-35 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 139 / 4e-35 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 137 / 2e-34 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 136 / 3e-34 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 137 / 4e-34 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 134 / 1e-33 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067000 [exp] 498 / 3e-172 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.005G112400 [exp] 197 / 3e-56 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.012G072101 [exp] 164 / 7e-48 AT1G74780 0 / 1 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.002G133900 [exp] 144 / 8e-37 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 142 / 4e-36 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 140 / 2e-35 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 137 / 1e-34 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 135 / 7e-34 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.001G194500 [exp] 120 / 3e-31 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 122 / 2e-29 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10033115 pacid=23177032 polypeptide=Lus10033115 locus=Lus10033115.g ID=Lus10033115.BGIv1.0 annot-version=v1.0 ATGGAGATACTGCGAACTAAATGGGCAGCGACAGTAGCCGGAATCTGGATCCAATGTGTTGTCGGAGCCTCCTACACCTTCGGCATCTACTCCTCCGTCC TCAAGACCACCCAAGGCTACGACCAATCCACCCTCGACACCGTCTCCGTCTTCAAGGATATCGGCTCCAACGCCGGCATCCTTTCTGGTCTCCTCTACTC CTACGTCACCGCCCGTCCAAACGGCGGCGGGCCGTGGGTGGTTTACGCGGTCGGTGCCGTCCAGTGCTTCTTCGGATACTTTATGATGTGGGCCTCCGTC GTGGGTGTGATTCCGCCGCTTCCCGTGCCGGCGATGTGCCTGTTCATGTGGCTGGCTGCCCACGCTCACACCTTCTTCAACACCGCCAACGTTGTCACCG GCGTTCACAACTTCAGCAACTATGGCGGGACCATCGTCGGGATTATGAAGGGGTTTCTTGGTCTTAGCGGAGCAATCCTAATTCAATTCTACAACGTGGT ATGCAAGGACAGTCCAAGCACATTCCTCCTCCTCCTGGCAATCACCCCAACTTTAACGTCCCTCCTGCTCATGCTTCTTGTCAGAAACTACGACACCACT TCCCCCGCCGACAAGCACCACCTCAGCTCCTTCTCCGCCTTCGCCCTCTCCATAGCAGCCTACCTCGCCGCCCTTATCCTCCTCGGCAACGTCCTCACCC TCCCTTATTGGGCCCGCACATTGTCTTTCCTCCTACTCCTCTTCATCCTCGTCACTTCTCCCTTGACCACCGCCCTTAAAGCCCACCTCCACGAATCTGA CATCCTCGCTCGTGCCTTGCTCGAGGAGAGCGGGGCCAAGAAGCAATCACTCAGTAATGATATCGTTGAAGCAGGCAACAACGGCAACGATATTATTAAT GATGGTGATGATCATCATCACGACGTGAATATGCTGGAAGCGTTGTGCAGGCTGGACTTTTGGCTGCTTTTCTTGGCCGTGTTCTGCGGGCTGGGATCAG GAGTCGCAACAATCAACAACATTAGCCAGGTGGGCGAGTCGTTGGGATACACGACCGTGGAGACCAACTCCTTGGTCTCCTTATGGAGCATATGGAACTT CCTGGGGAGGTTTGGGGCCGGGTACATGTCCGATTCCCTCCTATACAAAGGCGGATGGGCCCGACCCTTGCTTATGGCCGTCACCCTGACGACCATGACG ATGGGTCACATCGTCATAGCTTCCGGGCTGCCTGCGTGTCTATACGTGGGGTCAGTCCTGGTGGGGGTTTCGTATGGGTCGCAGTGGTCGCTGATGCCAA CCATATGCTCCGAGATATTCGGGGTGGCGCACATGGGGACCATTTTCAACACCATAGCAGTGGCGAGTCCGCTCGGGTCTTATGTTTTCTCGGTGAGGGT CATTGGGTATCTTTATGATCGTCAGGTGTCCGGGAACAATAAGGACAAGGGTGCGGGGGAATGCATGGGGACTCGATGTTTCATGATGTCGTTTTTTATA ATGGCGTCCATGGCTTTTTTTGGGTCTTTAGTGGCTGTCGGGTTGTTCTTCCGGACTCGCCGATTTTATCGGGTGGTTGTGCTGCGGAGGCTCAAACGGA TGCAACTGTCTTAG
AA sequence Show only first row Show all	>Lus10033115 pacid=23177032 polypeptide=Lus10033115 locus=Lus10033115.g ID=Lus10033115.BGIv1.0 annot-version=v1.0 MEILRTKWAATVAGIWIQCVVGASYTFGIYSSVLKTTQGYDQSTLDTVSVFKDIGSNAGILSGLLYSYVTARPNGGGPWVVYAVGAVQCFFGYFMMWASV VGVIPPLPVPAMCLFMWLAAHAHTFFNTANVVTGVHNFSNYGGTIVGIMKGFLGLSGAILIQFYNVVCKDSPSTFLLLLAITPTLTSLLLMLLVRNYDTT SPADKHHLSSFSAFALSIAAYLAALILLGNVLTLPYWARTLSFLLLLFILVTSPLTTALKAHLHESDILARALLEESGAKKQSLSNDIVEAGNNGNDIIN DGDDHHHDVNMLEALCRLDFWLLFLAVFCGLGSGVATINNISQVGESLGYTTVETNSLVSLWSIWNFLGRFGAGYMSDSLLYKGGWARPLLMAVTLTTMT MGHIVIASGLPACLYVGSVLVGVSYGSQWSLMPTICSEIFGVAHMGTIFNTIAVASPLGSYVFSVRVIGYLYDRQVSGNNKDKGAGECMGTRCFMMSFFI MASMAFFGSLVAVGLFFRTRRFYRVVVLRRLKRMQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74780			Nodulin-like / Major Facilitat...		Lus10033115 [exp]	0	1
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	1.0	0.8784
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	2.8	0.7944
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	3.9	0.8041
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10028802 [exp]	5.2	0.7793
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	7.2	0.8210
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	16.1	0.7874
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	18.7	0.7716
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	18.8	0.7883
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	20.0	0.7848
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	21.7	0.7938

Compare expression of checked genes

Lus10033115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.