Plant FIBer expression Database

Lus10033116 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74790 855 / 0 catalytics (.1)
AT5G62630 754 / 0 HIPL2 hipl2 protein precursor (.1)
AT5G39970 740 / 0 catalytics (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036662
[exp]
1176 / 0 AT1G74790 923 / 0.0 catalytics (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G067200
[exp]
920 / 0 AT1G74790 915 / 0.0 catalytics (.1)
Potri.017G075800
[exp]
867 / 0 AT5G39970 837 / 0.0 catalytics (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF07995 GSDH Glucose / Sorbosone dehydrogenase
Representative CDS sequence
>Lus10033116 pacid=23177036 polypeptide=Lus10033116 locus=Lus10033116.g ID=Lus10033116.BGIv1.0 annot-version=v1.0
ATGGTAGCTATTCTTGCTATTCTCAATCTGTGCTTGGTACTTTTGATGCTTCCTGATCCTTCATTCTCTCATCCCTTGTGTACTGATTCCAGGGCTCCCA
TTACCTTGAATGCAACACTGAGTTTTTGTCCTTACAATGGAAGCTCCTGCTGCAATTCAGCACAAGATTCTCAATTGGCCAAACAGTTTCAGGCCATGAA
CGTTTCTAATCCTGGATGTTCTTCTCTACTCAAATCATTACTTTGCTCGAGATGCGATCCGTTTTCAGCGGAGTTGTTTCTGGCAAATCCGGTGCCACGT
ACTGTTCCAATTCTCTGCAACTCAACTGTTTCAGCTACTTCATCTCAATCTAGCCAAGGAGACGCCAACTTCTGCTCTAAACTGTGGGATACATGTCAAA
ATGCCTCCATCTCCAACTCTCCCTTTGCAGCTTCACTAGCAGGACAAGCTGGACTACCAGCCACCTCCAATTTCACCAAGCTAACAGATCTCTGGCAGTC
CAAATCAGATTTCTGCAGCGCATTTGGTGGAGAATCCGCTCAAGGCTCAGCCTGCTTTGATGGCGAACCTGTCGAACTCAATAATACTGGATCATCACCT
ACTCCTCCCCCACCAAATGGCCTCTGCCTGGAGAAAATTGGCAATGATTCCTATCTCAACATGGCAGCTCATCCGGATGGCTCCAACCGTGCTTTTTTTG
CCAACCAGCCCGGTCAGATATGGCTTGCAACGATTCCTGACCAAGGGTCCAAGGGAATTTTGGGAATTGATGAGGCCAGCCCTTTTATTGATCTAACTGA
TGTGGTTAATTACGATACTGAATTCGGGATGATGGGCATTGCATTTCATCCAAACTTCGCTCAGAATGGCAGGCTTTTCGCATCTTTCAACTGCGATAAG
GTCAAGTGGCCGGGATGCAATGGACGGTGTTCTTGCAACTCCGACGTGAATTGTGATCCTTCAAAGCTGGCTCCTGATAATGGTGCTCAGCCATGCCAGT
ATCAAACTGTTGTTGCAGAGTACAGTGCTAATGGCTCCTCAACAAGTCCTTCCTCGGCTACATCTGCAAAACCGGTAGAGGTGAGGAGGATATTCACAAT
GGGACTTCCTTTTAGATCACACCATGCAGGACAGATTCTCTTTGGACCTCAAGATGGTTATCTCTACTTTATGATGGGAGACGGAGGCGGGACAGGCGAT
CCTTACAACTTTGCGCAGGATAAGAAATCGTTACTTGGAAAGATCATGCGTCTTGATGTCGATAACTTCCCAAGTACTGAAGAAATCACAAACAACAGCC
TTTGGGGAAACTACTCTATCCCTAGTGATAACCCGTACAAAGAAGACAATGATATGCAGCCCGAGATCTGGGCTATGGGACTCAGAAATCCTTGGCGCTG
CAGTTTCGATGCAGCTAGGCCATCCTACTTTCTCTGTGCAGATGTTGGGCAGGATCACTATGAAGAGGTTGATCTGATCACCAAGGGAGGAAACTACGGT
TGGCGAGTTTACGAGGGAAACGATGCTTACAAACCTCCTGCATCCCCCGGAGGAAACACACTTCCTAGCTCAATCAACCCAATCTACCCAATTATGGGAT
ACAACCACTCCAATGTGAACAAGAATGAAGGGTCAGCTTCGATCACTGGGGGTTATTTCTACCGCTCCCAGACTGATCCTTGCATGTATGGGAAGTACTT
GTATGCAGATTTGTATGCCAGTTCCATGTGGACAGGAACCGAAACACCGGAATATAGTGGCAACTTCACAGCCAACACAATTCCTTTCAGTTGTGCGAAA
GACTCTCCTATCCCATGCACCTCTGTTCCTGGAAGTGACTTCCCATCATTGGGCTACATTTTCTCCTTCGGCCAGGATAACCGCAATGATGTCTACCTCC
TAGCCAGCAGTGGTGTTTACAGAGTAGTTCCTCCGAGCCGCTGCAGTTATGTGTGCTCCAAGGAAAATGCAACAGCAACTGCTGGAAATAGCCCCGGTTC
TGCTTCTTCACCACGCTCATCGTCAACAACTCAGCTGCAAAGTGGGTTCAACATCCGAGTTGTACTCCTGCTGTCTTCCTTGTTGCTCCTTCTGATTGGT
TCTACTTAG
AA sequence
>Lus10033116 pacid=23177036 polypeptide=Lus10033116 locus=Lus10033116.g ID=Lus10033116.BGIv1.0 annot-version=v1.0
MVAILAILNLCLVLLMLPDPSFSHPLCTDSRAPITLNATLSFCPYNGSSCCNSAQDSQLAKQFQAMNVSNPGCSSLLKSLLCSRCDPFSAELFLANPVPR
TVPILCNSTVSATSSQSSQGDANFCSKLWDTCQNASISNSPFAASLAGQAGLPATSNFTKLTDLWQSKSDFCSAFGGESAQGSACFDGEPVELNNTGSSP
TPPPPNGLCLEKIGNDSYLNMAAHPDGSNRAFFANQPGQIWLATIPDQGSKGILGIDEASPFIDLTDVVNYDTEFGMMGIAFHPNFAQNGRLFASFNCDK
VKWPGCNGRCSCNSDVNCDPSKLAPDNGAQPCQYQTVVAEYSANGSSTSPSSATSAKPVEVRRIFTMGLPFRSHHAGQILFGPQDGYLYFMMGDGGGTGD
PYNFAQDKKSLLGKIMRLDVDNFPSTEEITNNSLWGNYSIPSDNPYKEDNDMQPEIWAMGLRNPWRCSFDAARPSYFLCADVGQDHYEEVDLITKGGNYG
WRVYEGNDAYKPPASPGGNTLPSSINPIYPIMGYNHSNVNKNEGSASITGGYFYRSQTDPCMYGKYLYADLYASSMWTGTETPEYSGNFTANTIPFSCAK
DSPIPCTSVPGSDFPSLGYIFSFGQDNRNDVYLLASSGVYRVVPPSRCSYVCSKENATATAGNSPGSASSPRSSSTTQLQSGFNIRVVLLLSSLLLLLIG
ST

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G74790 catalytics (.1) Lus10033116
[exp]
0 1
AT5G20630 ATGER3, GLP3A, ... GERMIN-LIKE PROTEIN 3, ARABIDO... Lus10036296
[exp]
1.0 0.9599
AT1G11380 PLAC8 family protein (.1) Lus10002586
[exp]
2.8 0.9579
AT1G74790 catalytics (.1) Lus10036662
[exp]
3.5 0.9353
AT5G49760 Leucine-rich repeat protein ki... Lus10007587
[exp]
3.9 0.9483
AT1G32170 XTH30, XTR4 xyloglucan endotransglycosylas... Lus10010427
[exp]
5.3 0.9458
AT5G24530 DMR6 DOWNY MILDEW RESISTANT 6, 2-ox... Lus10000711
[exp]
5.7 0.9404
Lus10005395
[exp]
5.7 0.9355
AT1G29280 WRKY ATWRKY65, WRKY6... WRKY DNA-binding protein 65 (.... Lus10029252
[exp]
5.7 0.9525
AT5G37480 unknown protein Lus10013637
[exp]
7.2 0.9252
AT1G63380 NAD(P)-binding Rossmann-fold s... Lus10007038
[exp]
7.5 0.9508

Lus10033116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.