Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62610 216 / 1e-69 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 213 / 1e-68 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT3G07340 162 / 8e-47 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 158 / 5e-45 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 154 / 9e-45 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 156 / 3e-44 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 147 / 3e-42 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT1G10120 147 / 8e-42 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 146 / 9e-42 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT5G50915 137 / 5e-39 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036659 [exp] 435 / 7e-156 AT5G62610 256 / 3e-85 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013284 [exp] 248 / 3e-82 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10030807 [exp] 246 / 2e-81 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10013052 [exp] 163 / 1e-46 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 159 / 2e-45 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 153 / 1e-44 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030908 [exp] 157 / 2e-43 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 156 / 6e-43 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10040448 [exp] 146 / 6e-42 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068100 [exp] 306 / 6e-105 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G072700 [exp] 305 / 1e-104 AT5G62610 228 / 4e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G040000 [exp] 229 / 3e-75 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.008G190800 [exp] 207 / 2e-66 AT1G59640 230 / 2e-75 BIG PETAL UB, BIG PETAL P (.1.2) Potri.002G248500 [exp] 168 / 2e-48 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 164 / 9e-47 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 161 / 9e-46 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 154 / 4e-43 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.010G136100 [exp] 152 / 2e-42 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G117300 [exp] 149 / 5e-42 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033120 pacid=23176955 polypeptide=Lus10033120 locus=Lus10033120.g ID=Lus10033120.BGIv1.0 annot-version=v1.0 ATGGATCCTCCGCTTATAAATGAGTCCTCTTTCTCCTCGGCCAACCCTGCTTCTTACTCATTGGTTGAGATTTGGCCCTTTCATGTACAAGGAGCCGCCC CTGCTGGTGGTGCTGGTGGCTCGGGCCTCCGTATGAGCAATTTTGGGTTTTCTGTTGGAGACCGAGATGGCTCTGCTGAGGAATCCACCGTCACAGACCA GAGCGCCGGCGCCGGAAGGAAGCGGAGGGATTTCAGCTCTGAGGATGAGTCTTCTAGGATGGTTTCTACTACCAGTAGTGGCAATGAATTGAATGATTCC AAGAATAAGCGGATGAAGCAATCAGGGTCCAGAAATGAAACTGATAGCTCCAACCCTGCTGCTGCCCAAAGCAAACCGTCTGAGCCGCCTAAGCAAGATT TCATTCATATCAGAGCAAGAAGGGGACAAGCCACTGATTGCCACAGTTTGGCCGAAAGAGCTAGGCGAGAAAAGATAAGTGAGAGGATGAAGCTACTCCA GGATTTGGTGCCGGGTTGTAATAAGGTAATTGGTAAGGCACTAGTCCTTGATGAGATTATTAATTATATCCAGTCATTACAACGTCAGGTTGAGTTCCTG TCGATGAAGCTAGAGGCTGTGAATGCGAGGATGAGCATGAACCTTACCATGGACAGTTTCAATCCTAAAGATATTGGCTCCCAGCCATTCGATGGTAATG GGATGATGTATGGACAACAAGCAACTAGAGACTATGTGCAAGGACCACAAGCAGAATGGTTACACATGCAGGTTGGTGGTGGTTTTGAAAGATCAGCTTG A
AA sequence Show only first row Show all	>Lus10033120 pacid=23176955 polypeptide=Lus10033120 locus=Lus10033120.g ID=Lus10033120.BGIv1.0 annot-version=v1.0 MDPPLINESSFSSANPASYSLVEIWPFHVQGAAPAGGAGGSGLRMSNFGFSVGDRDGSAEESTVTDQSAGAGRKRRDFSSEDESSRMVSTTSSGNELNDS KNKRMKQSGSRNETDSSNPAAAQSKPSEPPKQDFIHIRARRGQATDCHSLAERARREKISERMKLLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL SMKLEAVNARMSMNLTMDSFNPKDIGSQPFDGNGMMYGQQATRDYVQGPQAEWLHMQVGGGFERSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	0	1
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10040622 [exp]	1.0	0.7606
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10030303 [exp]	7.5	0.7017
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	7.7	0.7253
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	8.9	0.7328
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10028185 [exp]	11.0	0.6708
AT3G09470			Major facilitator superfamily ...		Lus10023760 [exp]	15.0	0.6547
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	15.6	0.7111
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	16.0	0.7160
AT1G48745			unknown protein		Lus10007969 [exp]	19.3	0.6264
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	20.9	0.7188

Compare expression of checked genes

Lus10033120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.