Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18990 363 / 1e-119 Protein of unknown function, DUF593 (.1) AT1G74830 335 / 3e-108 Protein of unknown function, DUF593 (.1) AT1G08800 89 / 4e-18 Protein of unknown function, DUF593 (.1.2) AT5G16720 79 / 3e-15 Protein of unknown function, DUF593 (.1) AT2G30690 77 / 2e-14 Protein of unknown function, DUF593 (.1) AT1G70750 66 / 3e-11 Protein of unknown function, DUF593 (.1) AT4G13630 54 / 3e-07 Protein of unknown function, DUF593 (.1.2) AT3G54740 53 / 3e-07 Protein of unknown function, DUF593 (.1.2) AT1G04890 53 / 3e-07 Protein of unknown function, DUF593 (.1) AT5G06560 53 / 5e-07 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036656 [exp] 811 / 0 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1) Lus10018782 [exp] 84 / 1e-16 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10024869 [exp] 81 / 1e-15 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10006566 [exp] 81 / 2e-15 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10014743 [exp] 77 / 1e-14 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10033854 [exp] 77 / 3e-14 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10005527 [exp] 76 / 3e-14 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 71 / 1e-12 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 65 / 2e-10 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073400 [exp] 377 / 1e-123 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.015G068400 [exp] 332 / 6e-108 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.019G007802 [exp] 92 / 3e-19 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 91 / 6e-19 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 90 / 1e-18 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 77 / 2e-14 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 71 / 1e-12 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 66 / 7e-11 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 66 / 8e-11 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 65 / 9e-11 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10033123 pacid=23177023 polypeptide=Lus10033123 locus=Lus10033123.g ID=Lus10033123.BGIv1.0 annot-version=v1.0 ATGGCAGCACAGAGAACATTCAAAGGTTTTGTAGAACAAGAACTTGGCAAGATCCCACACTTTGTTATCTATGCATTGTTGGAGTGGTTCTTGATTCTGG TCCTCTTGCTTGATGCCTCCCTCTCGTTTTTCGCCAACGAATATGCCAAGTTCTTCGAGCTGAGAATCCCTTGCCTGCTCTGTACGAGGATCAACCATGT CTTTCTCCACAAAAAACATCGTGACCAGTACCTCAACGACGCCCTCTGCGATTCCCACAGGAAGCGCGTATCCAGCCTGGCATATTGCCACATCCACAAG AAACTCTCTGATATCAGGACAATGTGCGAAGGATGCCTTCTCTCTTTTGCTACCGAGAAAGAATCCGGATCCTCAAACACCTACAAGTCTCTTGTTGGCA TCCTCCACAAGGACATTGAGCTCTTCTTTGATGACGACCACGAGGATATCCCATTGCCTCCCGGAAAGAGGGACGACGTTGTGATCCCTGCAGATAAGAG CCACTTTCATCGATGCTCATGCTGTGGAGGGCCATTGAAAGGTGGGAAATCAAAGGGGAAGAATGCCTCGTCGTCCTTCGTACAAGCTCCAACTCCTTCT CCAAGAGCATCTGCACCTCTTCGCCATCTCGACTTGCCTCCTGTTCAATACTCGGACCTCAAGTTCCTGGATAATGACTCGGAGATTGATGAATCAGCAA GAAAAGAAGTGAAAGAAGGAGCATCATTTGATGAGATGAACGAAGAGAGGACTCCTTCGTTTCTAAGAGGGCAGAACAAGTTCTTTGGCATCCCACTCAC AGATTCAGCAACCACAACTCCTAGATGGGCTATAAGATGCCCTAAGAAATCAGCACTGGACAAGGCCGAATTTGCCTCTTCGGAGACTGCAGAAAGCGGC AGCGAGAGTGCTACTGCTGCTGAGCAAGATGGGGACTCAATCCTCAACCACTTGAGGAGGCAGGTTCGCTTGGACCGCAAGTCACTGATGGATCTATATA TGGAGCTGGACGAAGAGAGGAATGCCTCAGCCGTTGCAGCAAACAATGCGATGGCGATGATCACGAGGCTGCAGGCTGAGAAAGCAGCTGTCCAAATGGA AGCATTGCAGTACCAGAGGATGATGGAAGAGGAGGCCGAGTACGATGAAGAAGCCATACAATTACTGAGGGATGAGTTGAGAAAGAAGGACAGACACATA AAGCACCTGGAGAACGAAATAGAGGCTTACAGAATCAAGCATGGTGATCTGACAGAAGATGGTTTTGTGATGGATGATGAGGAGGATTACCTTGAAATGG ACGAGAGATCGGAGTTCGCCACCCCAACTTACATCTCTACTGAAGGGAAAAGCCTTGGAGGAAGGAGCAATAGTTTTAACAGCAATGGGTCTACTTCTTC AAAATATCTAATGAGGAGTGCAAGTGGAAGGGACAGATCAGAGAAGATTAATCAAAGTGAGAATGTTGGAGGAGGGGATCAGGGGGGTAAAAGCTCTAGC AAATTCGGTGGACTTCGCCGGCTGAAGCACTTGGAGAAGAAGCAGCAGGGTTCATCATCAGAAGACGAGACAGAACAAGAGATCAGAATGAATATGAGGA ATGACGTGACTCATCTGCGTGCAAGGGTAAGAACAGTGGAAGAAGAGGATGATTTCTTCAGAGATGATGAACTTTTTGTAGAGGTGAACAATGGAAGTGA GAAGCTTGCGTCGCCATCTGATGACTGA
AA sequence Show only first row Show all	>Lus10033123 pacid=23177023 polypeptide=Lus10033123 locus=Lus10033123.g ID=Lus10033123.BGIv1.0 annot-version=v1.0 MAAQRTFKGFVEQELGKIPHFVIYALLEWFLILVLLLDASLSFFANEYAKFFELRIPCLLCTRINHVFLHKKHRDQYLNDALCDSHRKRVSSLAYCHIHK KLSDIRTMCEGCLLSFATEKESGSSNTYKSLVGILHKDIELFFDDDHEDIPLPPGKRDDVVIPADKSHFHRCSCCGGPLKGGKSKGKNASSSFVQAPTPS PRASAPLRHLDLPPVQYSDLKFLDNDSEIDESARKEVKEGASFDEMNEERTPSFLRGQNKFFGIPLTDSATTTPRWAIRCPKKSALDKAEFASSETAESG SESATAAEQDGDSILNHLRRQVRLDRKSLMDLYMELDEERNASAVAANNAMAMITRLQAEKAAVQMEALQYQRMMEEEAEYDEEAIQLLRDELRKKDRHI KHLENEIEAYRIKHGDLTEDGFVMDDEEDYLEMDERSEFATPTYISTEGKSLGGRSNSFNSNGSTSSKYLMRSASGRDRSEKINQSENVGGGDQGGKSSS KFGGLRRLKHLEKKQQGSSSEDETEQEIRMNMRNDVTHLRARVRTVEEEDDFFRDDELFVEVNNGSEKLASPSDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	0	1
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	2.2	0.8849
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	2.8	0.8774
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	4.2	0.8470
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	5.5	0.8717
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	6.5	0.8546
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	6.6	0.8429
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Lus10009780 [exp]	8.7	0.8693
					Lus10027784 [exp]	8.8	0.7937
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	8.9	0.8479
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	9.5	0.8388

Compare expression of checked genes

Lus10033123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.