Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11010 445 / 2e-156 Pre-mRNA cleavage complex II protein family (.1.2.3) AT3G04680 49 / 3e-06 CLPS3 CLP-similar protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036655 [exp] 689 / 0 AT5G11010 467 / 2e-165 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10014756 [exp] 618 / 0 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033870 [exp] 190 / 6e-59 AT5G11010 142 / 9e-41 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10015355 [exp] 62 / 4e-10 AT3G04680 674 / 0.0 CLP-similar protein 3 (.1.2) Lus10007269 [exp] 57 / 1e-08 AT3G04680 571 / 0.0 CLP-similar protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073500 [exp] 543 / 0 AT5G11010 480 / 2e-170 Pre-mRNA cleavage complex II protein family (.1.2.3) Potri.017G077200 [exp] 56 / 2e-08 AT3G04680 655 / 0.0 CLP-similar protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06807 [flax] [poplar] Clp1 Pre-mRNA cleavage complex II protein Clp1 CL0023 [flax] [poplar] P-loop_NTPase PF03205 [flax] [poplar] MobB Molybdopterin guanine dinucleotide synthesis protein B
Representative CDS sequence Show only first row Show all	>Lus10033124 pacid=23176989 polypeptide=Lus10033124 locus=Lus10033124.g ID=Lus10033124.BGIv1.0 annot-version=v1.0 ATGCCTTCCCTATCGGCGCCGGAAGAGTCGTCATCATCCCCGACTATATGCATTCCCGACGAGTGGGCGGCCGCTGGTGACACTATTGCCTTTGACTCCA ACAACAGTCTTCCTCCTATTGCCCTTATTTGTGGCGCCAAAAACTGTGGCAAAACCACCTTCTCCCGTTACCTCCTCAACGTTCTTCTCCGCAGATATAG AAGAGTGGGATACTTGGACACGGATGTTGGGCAACCTGAGTTTACTACTCCTGGTTTCTTATCCCTCACGGTGGTTGATGAACTAACTCCAGATTTGACG ATTCCCTGCTTAAAGAGACCTGAGAGATGCTTTTTCTTTGGCGACACTTCTTCAAAACGGGATCCTACAAGCTACCTGAAGTACATATCTGCACTTTATG ACTACTACCGCAAGGAGTATTGCACCTATGACACTACTAATAGTTCTTCTAAGAGAGGATTGCCTCTTGTAGTCAACACACCTGGCTGGGTGAAGGGTGT TGGTTATGATATACTGGTGGACATGTTGAGATATATTGCACCCACTCATGTGGTCAAGATAGATACATTTGCAGCTAGAAAGAATCTACCAGCTGGGAAA TTTTGGATAGATGGTGAAGCTGACACGGAGGTTAATCTAATTGAAATTTGTTCAGCTAATCAGGACTCTTTCAATAGATCGGTGCTTGTGAAAAAGGATG CTCATCTTTTGCGGGATCTGCGAATAATGGCATATTTCAGACAGTGCTTTCCTGGTACCTTAAAGGTTAATACAATCAAGGAACTTGCGAATGCCCTTGC TTCTCATCCTCCTTACCAAGTTCCCACATCGAGTATTAAGATCAGGCATCTTTATTGCCAGGTACCTCAAGCGGAAGTCTTTTACAGTTTGAATGCTACT ATTGTTGGTTTGGCCAACAGTTCTGAGCAGGCAGGAACTCTACCATGGTGTCTCGGTCTTGGGATAGTGAGAGGAATCGATACTGTGAAAGGGTTGGTTT ACATAATCACACCAGTTCCACAGAGCATCCTGGAAAAGGTTGATCTACTACTGCAGGGATTCATCGAGATACCTACTTGTTTGTTGCAGGTCCAAGGATG TATGTCACCTTACATGTCTACAAATGTTTTGCCCATAAGTTAA
AA sequence Show only first row Show all	>Lus10033124 pacid=23176989 polypeptide=Lus10033124 locus=Lus10033124.g ID=Lus10033124.BGIv1.0 annot-version=v1.0 MPSLSAPEESSSSPTICIPDEWAAAGDTIAFDSNNSLPPIALICGAKNCGKTTFSRYLLNVLLRRYRRVGYLDTDVGQPEFTTPGFLSLTVVDELTPDLT IPCLKRPERCFFFGDTSSKRDPTSYLKYISALYDYYRKEYCTYDTTNSSSKRGLPLVVNTPGWVKGVGYDILVDMLRYIAPTHVVKIDTFAARKNLPAGK FWIDGEADTEVNLIEICSANQDSFNRSVLVKKDAHLLRDLRIMAYFRQCFPGTLKVNTIKELANALASHPPYQVPTSSIKIRHLYCQVPQAEVFYSLNAT IVGLANSSEQAGTLPWCLGLGIVRGIDTVKGLVYIITPVPQSILEKVDLLLQGFIEIPTCLLQVQGCMSPYMSTNVLPIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	0	1
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	2.4	0.8967
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	2.6	0.9054
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	5.8	0.9019
AT5G07950			unknown protein		Lus10021622 [exp]	7.9	0.8939
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10024126 [exp]	8.1	0.8884
AT5G02520			unknown protein		Lus10025814 [exp]	8.5	0.8902
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10004691 [exp]	9.8	0.8987
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	13.0	0.8816
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	18.0	0.8849
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	21.9	0.8571

Compare expression of checked genes

Lus10033124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.