Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 469 / 1e-161 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 433 / 2e-147 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G62310 234 / 3e-66 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G17850 228 / 5e-64 Protein kinase superfamily protein (.1) AT1G48490 219 / 3e-61 Protein kinase superfamily protein (.1.2.3) AT1G45160 215 / 5e-60 Protein kinase superfamily protein (.1.2) AT5G09890 207 / 7e-60 Protein kinase family protein (.1.2) AT3G10540 201 / 1e-57 3-phosphoinositide-dependent protein kinase (.1) AT2G19400 199 / 6e-57 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G33080 198 / 1e-56 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036653 [exp] 737 / 0 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10025213 [exp] 457 / 2e-152 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021386 [exp] 381 / 3e-130 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10022732 [exp] 261 / 2e-81 AT3G08720 401 / 1e-137 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10014181 [exp] 233 / 7e-71 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10027196 [exp] 230 / 9e-65 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 228 / 6e-64 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031332 [exp] 228 / 7e-64 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10005470 [exp] 224 / 3e-63 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073700 [exp] 597 / 0 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G109600 [exp] 471 / 3e-162 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 467 / 1e-160 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G044700 [exp] 231 / 5e-65 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 223 / 3e-62 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.012G127800 [exp] 220 / 1e-61 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.015G129200 [exp] 219 / 2e-61 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 215 / 6e-60 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G125800 [exp] 201 / 1e-57 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 201 / 1e-57 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033125 pacid=23176975 polypeptide=Lus10033125 locus=Lus10033125.g ID=Lus10033125.BGIv1.0 annot-version=v1.0 ATGCCATATATTAATTCGTTGAAGCTCGGCTCTTATGTTTTCTGTTTCTACTCGGCATTCATCCACCGGCTCCGCTGTGTCAGCCAATCACTAATCGCCA GACAAAACGAGCTAAATAAGCCGGCTTATCCTTCGCCACTTTTACTTTTGCTTCTCCCTCCCAACTCTTGGCTTCCCTCCTCGTCCTCGATACCCGTCCC CTTCCGTCTGAAACAGACAGAAACAGATCCGTTCTCAGAACGCCGGAAGATGGTGTCGGCGTCTCAGAAGAAGAACCTTCGAGACTCTCTCTTGTCCACC AACCTCAAGAAGCTCACCATTACCCCTCCGGATTCCACCTCCGACTTCGACTTTTCCGACGTTTTCGGCCCAACTACTCCTCATCCACCTCCCAACCCGG ATCCGGACCATGACCCGGGCGCTTCCTCATCCTCCGCCTCCTCCTCTTCTCCCCCCTCTTCCGCTCCCACAGCCACAACAGCAGCCACGGTGGACCCACT TGTCATCCACAACCGGTTCCACTCCTTCGTGGGGCCCTCCCCTCGCTTCACCCTCTCCGTCCCTCTCTCCTTCACCAAAATTCTGGAAGAAGAAGATGAT GGCGAAGAAGACGAAGCCTCATCCGCCGCCAAAATTGACGCTGGAGAAACCGGCGTCGTCGAATGCCAGAAGAAGGAAGATGGAGAGGATGGAAGCAATT GCAACAGGAGGATCGGGCCTGGTGATTTTGAGATACTGAGAATGGTTGGTCAGGGAGCGTTTGGGAAGGTGTTTCTCGTGAAGAGGAAGAAGCAGAAGCT CGGCAATGGCGATGGGATCTTCGCAATGAAAGTGATGAGGAAAGACAACATAATCAAGAAGAATCATGTGGATTACATGAGAGCTGAGAGGGATATTCTC ACTAAAGTCATCCATCCTTTCATCGTCCAGCTTCGTTACTCTTTCCAGACCAAAACAAAGCTTTATTTAATCCTTGATTTCATAAACGGAGGTCATCTCT TCTTCCACCTCTATCGTCAAGGGATCTTCAGTGAGGATCAGGCGAGGCTTTATGCTGCTGAGATTGTCTCTGCTGTTTCACATCTCCATGATTGCGGGAT TGTGCATCGAGATCTTAAGCCTGAAAATATTCTCTTGGATGTTGATGGACATGTTATGCTAACTGATTTTGGACTCGCAAAGGAGATTGACGAGTCCAGC AGGTCCAATTCAATGTGCGGGACTACTGAATACATGGCTCCTGAAATCTTACTCTCTAAAGGCCACAATAAAGATGCAGATTGGTGGAGTGTGGGAATTC TCTTGTATGAAATGTTAGCTGGACAGCCTCCATATACACACCAGAATAGGAAGAAGCTCCAGGAAAAGATTATTAAAGAGAAGATCAAACTACCACCTTT GATAAGCAGTGAGGGTCATTCTCTGCTTAAAGGGTTGCTGCAAAAGGATCCTTCAAAAAGGCTAGGTAATGGACCAGGCGGAGGAGATGACATTAAACAT CACAAATGGTTCAAGTCGATCAACTGGAAAAAATTGGAGGCAAGGGAACTACAGCCTAAATTCGTACCAGTTGTGAGTGGGAAGGAATGCACTAGCAATT TTGACAAGTGTTGGACAAGTATGCCTGTCGATGACTCGCCAGCTTCCACGCCAACGGCTGGCGAATTTTTCCAAGGTTATACTTATGTTGCCCCCAACCC TTGGCTTTCTTCTGTATGA
AA sequence Show only first row Show all	>Lus10033125 pacid=23176975 polypeptide=Lus10033125 locus=Lus10033125.g ID=Lus10033125.BGIv1.0 annot-version=v1.0 MPYINSLKLGSYVFCFYSAFIHRLRCVSQSLIARQNELNKPAYPSPLLLLLLPPNSWLPSSSSIPVPFRLKQTETDPFSERRKMVSASQKKNLRDSLLST NLKKLTITPPDSTSDFDFSDVFGPTTPHPPPNPDPDHDPGASSSSASSSSPPSSAPTATTAATVDPLVIHNRFHSFVGPSPRFTLSVPLSFTKILEEEDD GEEDEASSAAKIDAGETGVVECQKKEDGEDGSNCNRRIGPGDFEILRMVGQGAFGKVFLVKRKKQKLGNGDGIFAMKVMRKDNIIKKNHVDYMRAERDIL TKVIHPFIVQLRYSFQTKTKLYLILDFINGGHLFFHLYRQGIFSEDQARLYAAEIVSAVSHLHDCGIVHRDLKPENILLDVDGHVMLTDFGLAKEIDESS RSNSMCGTTEYMAPEILLSKGHNKDADWWSVGILLYEMLAGQPPYTHQNRKKLQEKIIKEKIKLPPLISSEGHSLLKGLLQKDPSKRLGNGPGGGDDIKH HKWFKSINWKKLEARELQPKFVPVVSGKECTSNFDKCWTSMPVDDSPASTPTAGEFFQGYTYVAPNPWLSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10033125 [exp]	0	1
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	3.6	0.7092
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10037584 [exp]	5.5	0.6418
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10032541 [exp]	5.5	0.6595
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	6.7	0.6735
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	13.7	0.6532
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	20.0	0.6177
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	24.9	0.6422
AT2G47390			Prolyl oligopeptidase family p...		Lus10010007 [exp]	28.1	0.6429
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	29.5	0.6325
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	29.8	0.6548

Compare expression of checked genes

Lus10033125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.