Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74850 1179 / 0 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G31400 290 / 2e-84 GUN1 genomes uncoupled 1 (.1) AT2G18940 268 / 3e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 263 / 1e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G41720 231 / 3e-64 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39980 206 / 2e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18110 202 / 2e-53 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 199 / 8e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 190 / 1e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 194 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036651 [exp] 683 / 0 AT1G74850 502 / 4e-170 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10002107 [exp] 280 / 5e-82 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 283 / 7e-82 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022290 [exp] 271 / 2e-79 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10003657 [exp] 271 / 5e-79 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10015530 [exp] 259 / 7e-74 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 259 / 8e-74 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042068 [exp] 236 / 5e-66 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10006962 [exp] 233 / 8e-65 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069100 [exp] 1308 / 0 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.014G118500 [exp] 288 / 6e-84 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.001G297300 [exp] 281 / 4e-82 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 279 / 8e-81 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.009G092100 [exp] 270 / 4e-78 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 249 / 1e-70 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G049900 [exp] 244 / 1e-68 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 236 / 8e-67 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 213 / 8e-59 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 208 / 1e-57 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033127 pacid=23176976 polypeptide=Lus10033127 locus=Lus10033127.g ID=Lus10033127.BGIv1.0 annot-version=v1.0 ATGACAATCTCGCCGTCACTTTTCATCCTCAATTCCCCTTCTATCTCCGCCGAACTATTCAGGCTTGAGCCTAGTCGCCGCCGAACTCCTTTCCCCTGCT TCCCCGCTCCCCGCCGGTTATTCTCTTTCGCTGACGATCACAAGACGTCCCTCTCCCTTATAAAAACTAAAGCCAAGCGCAAGGAACTCATTCTCGCCAA TCCTTCCTTCGAAGTCGAGGAAGGTAAGTACACTTACGAAGTTGAAACAGTTATTAACAAGCTATGCAGCCTTCCACCGCGAGGCAGCATAGCTCGCTGT TTGGACAGCTTCAAGAGCAAGCTTTCCTTGAACGACTTCGCTTTGGTGTTCAAGGAGTTCGCCCAGCGCGGGGACTGGCAGCGCTCTCTCAGGTTGTTCA AATATATGCAGCGCCAGATCTGGTGTAAGCCAAACGAGCACATTTACACCATCATCATTAGTCTGTTAGGCAGGCAAGGCCTTCTGGATAAGTGCGCTGA TATATTCGAAGAAATGCCTACTCACGGCGTCGCACGCAGCGTCTTCTCCTACACGGCTTTGATCAATTCTTATGGCCGTCAAGGTAAGTATGAGGTTTCT ATTCAGCTTCTGAACAGAATGAAGGTAGAGAAGGTTCCTCCTAGCATTTTGACCTACAATACTGTGATTAATTCCTGTGCAAGAGGTGGTATGGATTGGG AAGGGTTGCTGGGTTTATTCGCAGAAATGAGGCATGAAGGAGTTCAACCTGATATTGTTACTTACAACACTTTGCTTTGCGCTTGTGCTGATAGGGGTCT TGGTGATGAGGCTGCCATGGTTTTCAGAACCATGAATGAGGGGGGTACGGTACCTGATTTAACAACGTATAAGTATCTTGTTGGCACATTTGAGAAGTTG AATAATTTAGATAAGGTTAGCGAATTGCTCAAGGAAATGGAATCTAGTGGAAGTTTGCCTGATGTTTCTGCGTACAATATCTTGTTGGAGGCATTCTCAA GAATAGGGGATATAAAGGATGCAATTGGAGTGTTTAGACAGATGCAAGAGGCAGGGTGTGTACCGAATGCTTCTACTTATAGTATATTACTCAATTTATA TGGTGTAAGAGGTAGGTATGATGAGGTTAGAGACCTTTTCTTGGAGATGAAATTAAGTGGCATAGAACCTGATCCTGAGACATATAACATACTTATAGAC GTGTTTGGTAAGGGCGGTTACTTTAAGGAGGCCGTAACGTTGTTCCATGATATGGTGGACGAGAATGTAGAGCCAAATATCCTTACCTACGAGGGTTTGA TATATGCTTGTGGTAAGGGAGGGCTTCATGAAGATGCTAAGAAGATTTTACTTCATATGAATGAAAATGACATGATGCCAAGTTCAAAGACATTTACAGG AGTTATCGAAGCTTATGGACAAGCTGCATTGTATGAAGAGGCCTTTGTTGCATTTAATACAATGAATGAATTGCAAGTTAGTCCAACTCTCGAGACGTAC AATTCATTAGTTAATATGTATGCAAGAGGTGGGTTGTACAAGGAATGTGAAGTAATATCGCGAAAAATGGGTGAAGCTGGAGTTGTAAGAAATAGGGATT CTTTCAATGGTTTAATAGAAGGTTACAGACAAGGTGGCAAGTTCGAAGAAGCTATCAAAGCATATGTTGAGATGGAACAGTGGAGAATCGATCCCGATGA ACAGACTCTCGAGGCAGTTCTGAGTGTGTACAGTGTTGCAGGTCTAGTTGAGGAGTGCAAGGAGCAGTTCAAAGAGATCAAATCATCAGGGATATTGCCT AGTGTCATCTGCTACTGTATGATGTTAGCTGTTTATGCAAAAAACGACAGATGGAGTGATGCTTATGAGCTACTTAATGAGATGCTTACTCATAGGGTGT CAAATGTCCATCAAGTGATTGGTCAGTTGATCAAGGGAGAATATGACGATGAGTCTAACTGGCAAATGGTGGAGTTTGTGTTTGACAGACTTAGTTCTGA AGGATGTGGCTTGGGAATGATGTTTTACAATACCCTTCTAGAAGCACTTTGGTGGCTTGGTCAGAAAAAACGGGCGGCAAAGGTGCTAAGAGAAGCAACA AAGAGAGGTCTCTTCCCAGAATTATATCGCAAAAGCAAACTTGTGTGGTCCGTGGATGTGCACAGGCTATGGGAAGGCGGTGCATATACAGCAGTATCTG TTTGGCTGAATAACATGTATGAGAGTTTCATTAATGGTGAAGATCTTCCACAACTTGCATCAATAGTTGTCGTACGAGGGAAGAGGGAAAGCGTGGCGCA AAGCATTCCCCATGCAAAAGCAGTGTACTCATTTATGGAAGATAATGGAGCATCATCATTCTTTCACTCAAGCTGGAACAAAGGCAGAATTACCTGCCAG AAACTTCACCTTAAGCGGTTTTTAGCGGACATACAGTCGTCAACTTCAGAGGGGACTGAAAAGCAAGAGTTGATTACTTTAAGCAACTTGCCACTCTCAC TTGATGAAACAAGATTCAGAAGAGATGATGCCAAGAGTAGCTACAATGGTTCGGCCAACTCTCAGACTAGTATGGAGAGAATAAGAACAGAGCTTTTGAC TAGCACAACGTAA
AA sequence Show only first row Show all	>Lus10033127 pacid=23176976 polypeptide=Lus10033127 locus=Lus10033127.g ID=Lus10033127.BGIv1.0 annot-version=v1.0 MTISPSLFILNSPSISAELFRLEPSRRRTPFPCFPAPRRLFSFADDHKTSLSLIKTKAKRKELILANPSFEVEEGKYTYEVETVINKLCSLPPRGSIARC LDSFKSKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGRQGLLDKCADIFEEMPTHGVARSVFSYTALINSYGRQGKYEVS IQLLNRMKVEKVPPSILTYNTVINSCARGGMDWEGLLGLFAEMRHEGVQPDIVTYNTLLCACADRGLGDEAAMVFRTMNEGGTVPDLTTYKYLVGTFEKL NNLDKVSELLKEMESSGSLPDVSAYNILLEAFSRIGDIKDAIGVFRQMQEAGCVPNASTYSILLNLYGVRGRYDEVRDLFLEMKLSGIEPDPETYNILID VFGKGGYFKEAVTLFHDMVDENVEPNILTYEGLIYACGKGGLHEDAKKILLHMNENDMMPSSKTFTGVIEAYGQAALYEEAFVAFNTMNELQVSPTLETY NSLVNMYARGGLYKECEVISRKMGEAGVVRNRDSFNGLIEGYRQGGKFEEAIKAYVEMEQWRIDPDEQTLEAVLSVYSVAGLVEECKEQFKEIKSSGILP SVICYCMMLAVYAKNDRWSDAYELLNEMLTHRVSNVHQVIGQLIKGEYDDESNWQMVEFVFDRLSSEGCGLGMMFYNTLLEALWWLGQKKRAAKVLREAT KRGLFPELYRKSKLVWSVDVHRLWEGGAYTAVSVWLNNMYESFINGEDLPQLASIVVVRGKRESVAQSIPHAKAVYSFMEDNGASSFFHSSWNKGRITCQ KLHLKRFLADIQSSTSEGTEKQELITLSNLPLSLDETRFRRDDAKSSYNGSANSQTSMERIRTELLTSTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	0	1
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	1.4	0.9570
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	1.7	0.9482
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	2.8	0.9467
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	3.2	0.9508
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	5.5	0.9398
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	5.7	0.9341
					Lus10005791 [exp]	6.3	0.9376
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	8.4	0.9378
AT1G53800			unknown protein		Lus10003930 [exp]	11.0	0.9013
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	11.0	0.9403

Compare expression of checked genes

Lus10033127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.