Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74860 148 / 1e-38 unknown protein AT1G19010 143 / 1e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036649 [exp] 1129 / 0 AT1G74860 145 / 3e-38 unknown protein Lus10036648 [exp] 762 / 0 ND / Lus10008033 [exp] 122 / 6e-32 ND / Lus10038713 [exp] 117 / 4e-31 ND / Lus10005983 [exp] 119 / 9e-28 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10020427 [exp] 115 / 4e-27 AT1G10840 570 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10007989 [exp] 116 / 2e-26 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009403 [exp] 104 / 2e-24 AT2G44860 120 / 2e-33 Ribosomal protein L24e family protein (.1.2) Lus10008761 [exp] 94 / 3e-20 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350000 [exp] 202 / 2e-56 AT1G19010 106 / 3e-25 unknown protein Potri.017G074300 [exp] 197 / 7e-55 AT1G19010 123 / 7e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033128 pacid=23176983 polypeptide=Lus10033128 locus=Lus10033128.g ID=Lus10033128.BGIv1.0 annot-version=v1.0 ATGGCCGATTCTGAGAAACTGACTGCGTTGAAGATAGCCTATGCCGATATAATACTGAACACGGCCAAGGAGGCGGCGGCGAGGGTAATGATGTCTGAGA GGAAAGTTCACCGGTACCAGCGAGAGCTATTTGCGACCAAGGATGAGGCCCTTCGGATGCTTCTCCGGCTCAAGCAGATGTTCGATGCTAAGGTCAGTGA AGCAGAAATCACATCTTTGAATCAACAGAAAAGAATTGATGAGCTAGAAGCACAACTTGGGGAAGCAGAGGATATAGTTAAAGACCTTAGATCAGAGTTG AGAGAACTGCAAGATGAGTTGGAGAGGGTTATAACCAATCAAATGCAGCCCTTTCGGGAAAACAGTTATGGTGGAGGTAATGCTAACGATATGACATTAA TGGAGCATAACGCAGTTAGTACTCCAGTGCCTATGGTCTCTTCTTTACCTGTGGCAGAGACTGATCCTGTTGCAGCTACTGAGATCACAAATTCAACTTC GACTATCTCATACAATGACCACCCGACCAAGCACCGTAGTGATAATGGTTCTCACAAGGCTAGTTGTTTTGTTTGTGATCCCGATTTCGCATCCATAATG ATGAGAAACAAAGAGCCTGAGCTGTACAAAAATGGATGCACTCATAGAATCCGTGCTTTAGAAGGGAATATCTTAGGTGGAAGTCTTCCTATTGTTGAGC AGAATAGTAGTGGAAAACAGCAAATATATAACGGAGATGACAAGGAAGGAAAGCATCCATGTCCCAAACTCACTGTCAAGGATGACATTGCACATGGTTT GGAGAATAACGAAGATGAGTTGAAGATACAAACTGAATCGGGATACGATTATGCAATAAAGTCTTTTCGAAAGAAACAGAAAAGAGCTACTAGATATAGA AAGCGGAAACTGTCTTTTAGGAGGTTTCCTGATCAGAATCTGGACAACAATGTTGAATGTGGAGAAGGCTCAATGAGAATTCAGGGTAAAGATTCTGAAT TGGAAGTAGCTAGAAACAAAAGTCCGAACTCAAAGGAAACGGGTTCACAGTCCGGATCGGCCGAAACTACAGAGGTAAATGTGAACTTTCTTAGACCTGG CTCAATCCAAATTACTGAAACCAATGATACGATGTTGGTGGAAGAGGAGGACCGCAATTCTGTGGAGGGTTCTAAGTCTACAGCTTGTAAATGTGATAAT GAGATATTGGTAGACTCAGAACTTAACGAGTCAGAAGCAAATCCACTTTCGAATGAAATGGCTATACAGTCTAGATTGGGCGAAGGTACCGAAGCTAGCA ATGATAAGCTGTCAGTGGAAGAGAAGGATCTTACGTCTGTGGAGGGTTCTGAGTCTCTAGCTAGTAAATGCGATGGTGAGACGTTCAGTCTCTTGTTGAT AGACTCAGAACCAATAAAGTCTGAAGCAAATCCACATTCCAATGAAATGGTTATACAGTCTGGAGTGTCTGAAGTTACCGACGGCAATCTGAACTTCCTT AGACCTTGCTCAGTCCAAAATAGCAGAAGCAGTGATAAGATGTCAGTGGAAGAGGAAGTCAAGTCTATGGAGGGTCCCGAGTCTCTTGGTAGTAAATCGA GTAATGAGGTTGGCAGCGGAAAGTCAGAGGCGAATGAGTGTGAAGCAAAGGAATCAGTTGGGGTGCAGGCAGTTGTTAGTAAGTTGATAAAGTACACATT CACAAGGAAACGGAAGAGGGAGTCTCTGACCAGCCCCCGCCCTGATGGGAAATCGGCAATTGATTTGAAGAGAAGGATGGGTGACAAACAAGTTGATTTG AAGGAGTCAGCCAAGTTTCTGAATAAAAATGGCGAAGCAAAAGGCGGAGGTGAGCAGCATAGCACTGACCCTATCGAAGAAGAGACTGATGGAATTCAGA AAATGCGAGGGAATGGCAAGTCAATGGAAACTATTAATCGACTTGTCGAGCGTGCGATTACGGCTTCGAATAGGAGAGAAGCAGATAAAAAGAAGAAAAA ACAAAAAATCTACGAAACCCCTGAGTCTTTCCCCCCAATTAGGATTTCGGTATGCTAA
AA sequence Show only first row Show all	>Lus10033128 pacid=23176983 polypeptide=Lus10033128 locus=Lus10033128.g ID=Lus10033128.BGIv1.0 annot-version=v1.0 MADSEKLTALKIAYADIILNTAKEAAARVMMSERKVHRYQRELFATKDEALRMLLRLKQMFDAKVSEAEITSLNQQKRIDELEAQLGEAEDIVKDLRSEL RELQDELERVITNQMQPFRENSYGGGNANDMTLMEHNAVSTPVPMVSSLPVAETDPVAATEITNSTSTISYNDHPTKHRSDNGSHKASCFVCDPDFASIM MRNKEPELYKNGCTHRIRALEGNILGGSLPIVEQNSSGKQQIYNGDDKEGKHPCPKLTVKDDIAHGLENNEDELKIQTESGYDYAIKSFRKKQKRATRYR KRKLSFRRFPDQNLDNNVECGEGSMRIQGKDSELEVARNKSPNSKETGSQSGSAETTEVNVNFLRPGSIQITETNDTMLVEEEDRNSVEGSKSTACKCDN EILVDSELNESEANPLSNEMAIQSRLGEGTEASNDKLSVEEKDLTSVEGSESLASKCDGETFSLLLIDSEPIKSEANPHSNEMVIQSGVSEVTDGNLNFL RPCSVQNSRSSDKMSVEEEVKSMEGPESLGSKSSNEVGSGKSEANECEAKESVGVQAVVSKLIKYTFTRKRKRESLTSPRPDGKSAIDLKRRMGDKQVDL KESAKFLNKNGEAKGGGEQHSTDPIEEETDGIQKMRGNGKSMETINRLVERAITASNRREADKKKKKQKIYETPESFPPIRISVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74860			unknown protein		Lus10033128 [exp]	0	1
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	9.8	0.7625
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	14.9	0.8068
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	17.5	0.7366
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	18.3	0.7183
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10005584 [exp]	22.2	0.7205
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	29.8	0.7204
AT2G47960			unknown protein		Lus10018483 [exp]	32.0	0.7378
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	35.2	0.7349
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	51.2	0.6669
AT5G28646		WVD2	WAVE-DAMPENED 2, TPX2 (targeti...		Lus10000016 [exp]	51.6	0.6134

Compare expression of checked genes

Lus10033128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.