Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62580 320 / 3e-101 ARM repeat superfamily protein (.1) AT1G27210 134 / 3e-33 ARM repeat superfamily protein (.1) AT1G59850 122 / 2e-29 ARM repeat superfamily protein (.1) AT4G27060 82 / 5e-16 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT2G07170 82 / 5e-16 ARM repeat superfamily protein (.1) AT1G50890 74 / 1e-13 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036647 [exp] 890 / 0 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10010730 [exp] 235 / 7e-69 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10036675 [exp] 196 / 2e-55 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1) Lus10027590 [exp] 100 / 1e-21 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10040047 [exp] 86 / 3e-17 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10008545 [exp] 83 / 2e-16 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10011149 [exp] 79 / 4e-15 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 75 / 9e-14 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019618 [exp] 45 / 0.0002 AT4G27060 507 / 8e-171 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G074400 [exp] 495 / 6e-169 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 486 / 2e-165 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 273 / 5e-83 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 266 / 2e-80 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 93 / 2e-19 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 59 / 1e-08 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 57 / 4e-08 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033129 pacid=23176959 polypeptide=Lus10033129 locus=Lus10033129.g ID=Lus10033129.BGIv1.0 annot-version=v1.0 ATGGCGCAAAGCTTCAAGATGAAGGTGCTAACTCTAATCACCAAGCTATCCGACCGGGACACCTACACAGCCGCAGCCGATCAACTTGAGTCAATAGCTG CCACGCTCGACGGCAGCACTCTCCCTACATTCCTCTCTTGCATCCTCTCCACCGACTCCGCCGACAAGGCATTAGTCCGGAAGCAATGCCTCCGTCTCCT ATCTCTCCTCTCGCTCCTCCACTCCAACTCACTCTCTTCCTTCTTGCCTAAGATCGTCACATACCTCACTCGCCGCCTCCGTGACCTTGATTCCTCCATC CGCTCTGAGTGCGTCGCCGCCGTCTCTTCTCTGTCCTCCAATGTAACGAGGCCGCCGTTCTCCTCGGCCTTCCTGAAGCCACTAAGCGAGGCCGTGTTCA CGGAACAGGACTTGAACGCGCAGGTTGGATCTGCTCTGTGTTTGGCTGCCGCGATCGATTCGGCCCCAGATCCGGATCCTGGGAGGTTGGGGAAGGCTCT CGTTGCCAGGCTGGAGAGGCTGGTGAAGAACGACGCCTACAAGGCGAAGAGTGCAGGTTTGGTTGTTCTGGGGAGTGTGATCGGAGTGGGAGGAATGAGG GGATATGGCGGGATGAGCGGTCTGGTTAAGTGCTTGACCGGTTTTCTGAGCCATCGGGATTGGGCAGCTAGAAAAGCTGCTGCCGAAGCGCTTAGTAGAT TGGCGATCGCTGAAAGGGATGCTGTAGCGGAGTTCAAGAGTGATTGCTTGAAAGTTTTCGAGAACCGGAGATTCGACAAGGTCAAAGCAACTAGGGAAGT AATGAGTCAAATGATAGAAGCATGGAAGCAGGTTCCTGATGTATCTGATGAACCATCTCCACCTCCTCGATCACAGGCTTCTTCAAGAGATGAAGTAGCT GATGGACGCTATCCACCTTCTGGATCCAGGAAGCCTTACTCTCTTAGTACTGAACCAGCTCAAACAAGAACAAGAGGAGTTTTATCAGCTGTATGTACTC CTGCTAATGGATCCTCTTCTAGGAAAATAGGTCCTATGAAGAGTGCTGACAAGAAAAAGAGCCCAACAATGACCCAGCAACAAGTGGATCGGAAGAAGCC CTTGGACTGGAAAGTAGAAGTTACAGTTTCCGACAATTCTTTTACAGGCGTTGGTGATGAAACTAGTGTGAAGCGGAGAATTGATGATGCACCTCAGAGC AGACTTTCAAAGCCAGAAACCAGGCGAGCTCTTTTCGGTAGGAACTCAGATGATAAAGCAGCCAAATCGAGTGGTTTCAAGTCTGGGTCTCGTGTGGCTC CTCAAGATGATAATGCCAACACAACAGCTGTTACTAATTCTGCTGAGAATCACAATACCAACCACAAAGACAGTGAAGAATTGAGTTTGATCCGTAGTCA GCTTCTTCAGATCGAAAGGCAACAGTCCAGTCTTCTTGATCTCCTACAGAGATTCATAGGAAGTTCCCAAAATGGGATGAGTTCACTAGAGACACGCGTG CAGGGGCTTGAGTTGGCACTGGATGAGATCTCTTATGATTTGGCGGTATCCAACGGGAGGATGGGTAGCAGTCATGGAACACCATGCTGCCGAATACCTG GTGCAGATTACTTGAGCTCAAAGCTATGGCGGAAGGGAGAGGACCACCACAATCCAACTACTTCTCGTTCAAGATTTGGTGGCATGCGGCCTAGAGGGGA GAGGGGAAGCAGTCATGAAACGTTCAACCTGGATAACTGTAGGCTGCACCTTCAACGGCGCGGTGGATTAATCGTGAATCCCTTGGCTGAAATTCACGAC TCGAGGGCCATGTCTGAGACGGGACGACAATGA
AA sequence Show only first row Show all	>Lus10033129 pacid=23176959 polypeptide=Lus10033129 locus=Lus10033129.g ID=Lus10033129.BGIv1.0 annot-version=v1.0 MAQSFKMKVLTLITKLSDRDTYTAAADQLESIAATLDGSTLPTFLSCILSTDSADKALVRKQCLRLLSLLSLLHSNSLSSFLPKIVTYLTRRLRDLDSSI RSECVAAVSSLSSNVTRPPFSSAFLKPLSEAVFTEQDLNAQVGSALCLAAAIDSAPDPDPGRLGKALVARLERLVKNDAYKAKSAGLVVLGSVIGVGGMR GYGGMSGLVKCLTGFLSHRDWAARKAAAEALSRLAIAERDAVAEFKSDCLKVFENRRFDKVKATREVMSQMIEAWKQVPDVSDEPSPPPRSQASSRDEVA DGRYPPSGSRKPYSLSTEPAQTRTRGVLSAVCTPANGSSSRKIGPMKSADKKKSPTMTQQQVDRKKPLDWKVEVTVSDNSFTGVGDETSVKRRIDDAPQS RLSKPETRRALFGRNSDDKAAKSSGFKSGSRVAPQDDNANTTAVTNSAENHNTNHKDSEELSLIRSQLLQIERQQSSLLDLLQRFIGSSQNGMSSLETRV QGLELALDEISYDLAVSNGRMGSSHGTPCCRIPGADYLSSKLWRKGEDHHNPTTSRSRFGGMRPRGERGSSHETFNLDNCRLHLQRRGGLIVNPLAEIHD SRAMSETGRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	0	1
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	1.4	0.8066
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	1.7	0.8080
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10038516 [exp]	3.7	0.7085
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	7.7	0.7610
AT5G37790			Protein kinase superfamily pro...		Lus10009125 [exp]	10.8	0.6716
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	10.8	0.7425
AT1G63220			Calcium-dependent lipid-bindin...		Lus10029565 [exp]	11.5	0.7312
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	13.5	0.7283
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	18.0	0.7423
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	21.2	0.7281

Compare expression of checked genes

Lus10033129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.