Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20060 369 / 6e-112 ATP binding microtubule motor family protein (.1) AT3G49650 107 / 2e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 104 / 1e-22 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 104 / 1e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G10180 104 / 2e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 102 / 8e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 101 / 2e-21 KICP-02 ATP binding microtubule motor family protein (.1) AT5G47820 100 / 2e-21 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G21730 100 / 3e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 100 / 3e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034537 [exp] 561 / 0 AT1G20060 194 / 2e-52 ATP binding microtubule motor family protein (.1) Lus10011579 [exp] 131 / 8e-31 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019245 [exp] 128 / 3e-30 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 113 / 4e-25 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 112 / 7e-25 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018145 [exp] 104 / 2e-22 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033849 [exp] 103 / 2e-22 AT5G27950 662 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 103 / 5e-22 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 103 / 5e-22 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068501 [exp] 564 / 0 AT1G20060 393 / 3e-121 ATP binding microtubule motor family protein (.1) Potri.005G150800 [exp] 107 / 3e-23 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G040700 [exp] 106 / 4e-23 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G081300 [exp] 104 / 1e-22 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G161100 [exp] 104 / 2e-22 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.007G046700 [exp] 103 / 3e-22 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G013300 [exp] 103 / 4e-22 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.013G033900 [exp] 102 / 5e-22 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 102 / 8e-22 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 100 / 3e-21 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10033133 pacid=23178048 polypeptide=Lus10033133 locus=Lus10033133.g ID=Lus10033133.BGIv1.0 annot-version=v1.0 ATGGACTCCATCACCCCACCACAATGTCCAAACACCGTCACCGTCCGCCGGAACCCTCCCCGACGGGCTAGGCCGACGCCGATGAAATATCCCGCTCCTA TTAACATGGAGGAACTCCTCCCGAATCCGCAGCCAGATCCGCCGTCCTCCTCCGCAGCCCAAGCTCCGGCACCTGATAGTCTGAAGGTCTTCCTCAGAAT TAAGCCAGTTGTGCGTGTCAACGCGACAGCGGCGTCCAAATTACTGGCAGCTTCCAAGTTGAGGACTAAGAACGCTTGGCCTCAGAACCCTACCGCGAAG AAGAATTCTACAAAGGAAAAGCCGGTCAGTGAGGTTTGCATATCGATGAACGATTGCCAGTCAGTCACGATATCTCCACCACCGTCGTTGGTCGAGTCGA AGAAGATCAAATCGGAAATTTACGAAGGGTTTTCTCATGTTTTCGCTCCTGATTCCTTGCAGAGTGAGGTTTATGACAAGATGGTGAAGCCGATGGTGGA TGATTTTCTCCAAGGCAGAAATGGAATGCTAGCTGCGTTAGGGCCTAGTGGTTCAGGAAAGACTCATACTGTGTTTGGGACTTCGAGAGAGCCGGGAATG GTTCCTCTCGCGCTTCAACACATTTTCAAACAGTCTAAGGGGAGTGATCGTAATTTGTCAAGAATTTTCATGAAGGGATCGATACAGTATGCAATGATTG TTTTGGCAATAGGCTTTGCTCCTTACAACTCTGTCATGTGCGAACTTTGCAGGTCATTCTTTTTGTCAATCTTTGAAATATATTCAGAGAAAGGAAGAGG TGAACGAATATGTGATTTGATTCCGGAAAGAGTTCAATCTGGCCTTCGCACGTCAGCTAAAGGGGTAATCATTCCTAATGCGTCAAAGGCAGAATCCTTG ATTGCTTGTGCAATGTTGAAGCGTGCTACGAGCATGACAAACACAAACAGTCAGTCGAGCCGATCACAGTGTATAATTAATGTACGGATGCTTGTGGAGA AACAAGATGGGGAACTCGGTGGTCAACCATGTGATGTGATGCTGACTATAGTCGACCTTGCTGGAGCTGAGCGGGAAAAGAAAACAGGGAATCAGGGTGC AAAATTGCTTGAAAGCAATTTCATCAACAACACTTCCATGGTTTTTGGACTGTGCCTTAGAGCACTGCTGGAACACCAGAAGAATCCCAAGAAACAACTC CAGATGCATTATCAGAACTCTCTGCTAACGAGGTACCTACGAGAATATCTAGAAGGCAAAAAGCGGATGAATTTGATATTAACAGTAAAGCCAGGGGAAG AGGACTATCTAGACACATCTTACCTACTCAGACAGGCTTCACCTTACATGAAAATAAAATTCAACAATCTTGACGATACAAGCGGTTTAGTTCGCAAGAG AAGGCCTGTCCAATTTTTGTCTAAGGTTGGACAAGACAAAAGACTGAAGCCTAGTGATGTTGATGTTCAGCCTGAACAACGGAAAGCCAACGGACCTGAA AATCTAACCTTGCAGGAAGATCCTACTAATGAGGCCCCAACTATAGACAACTCAGATTCTGTCATTACCAGCCCTATACACTTCAACTCCACTGAGTCTT TAACGACCGATAGAAGCCACACCATAATGAAGAACTTTGCAAAAGCGATATGGAGTGTCTTGAAGCAGTACAAGGAGAGGCTTGTGCTGGTTGAAAGAGA AGTTCAAAATGTTAGCGAAAACCTTGTAAATGAAAAGGCTAGACGAATTGAACTAGAAAAGGAACTTCTGGATTTGAAGTCACGCTGTGCTTGTTTCAAG AAAAATAAAGTGGAAGCCACCTTACTCAAAGTCAATACAAAGATTGAGGTGCACGAGAATCTGGCTGATAATGATGCTGACGAGTCACAAGGTGTCTTGA AATCCAATTCCGGTCGCAGTTCAAGGATGGCTGAACCTTTTTTAGAACAGATTCAACAAGATGTTGGTATATTTCCTGAGATCAATGCAAACACTGGCTC AACCTGCGAAGCAGATGAATGCTGTAGCAGTTGGTCGGAATTAGACATCAACGTTGTAAAGGAGGAAGACCTTATAGAAGAACAAGTACGTAGTATTTCT GGGGAACTTGGAAACGACAAGGCGGATCCCGTTGACATCCAGTCAGTTGTGCATGGTGAGGAAAATGTTGATTTGCAACTAAGCCCTGCCTGTCAGGATG AAAATGAGCAGAGTTCTGTCCAAGCAACGTCTTTTATTGAAGATCAAGTTCAAAGTACTTCCGGGGATCCTAGAAGCAATAGGAAGGAATGCCTTAATCT TACAGAGGAGCTCCAGTCAGTTGTGCATGGCGAGGAACGCGATGATTTGCAAAGAAGCCCAGCCCGTTACAGGGGAAATGAGCAGAGTTCAGTCCAAGCA ACTTCTGTCATTGAAGTTCAAGTTCAAAGTACTTCCGGTGACTCTAGAAACAGTAGGACGGAATCCTTTAATCTTATGGAGGAGCTCGTTGACATCCAGC CTGTTGTGCATGGCGAGGAATACGTTGATTTGCAACCATGCCCAGCCCGTTACGAGGAAAATGAGCAGAGTTCAGTACAAGCAGCTTCTGTTATTGAAGA TCAAGTTCAAAGTACTTCCGGGGACCCTAGAAACAATAGGTTGGAATGCCTTGATCTTACAGAGGAGCTCGTTGACATCCAGTCAGGTGTTCATGCCGAG GAACACGTTGATTTGCAACAAAGGCCAGCCCTTTTCAAGGAAGATGAGAAGAGTTCAGTCCAAGCAACTATGGAGAGACATCAATCTGGCCGCTTAGAGA AGAGAGGCAAAGGTGGGAAGAAATTGGGCGTAGATGAAACAAAGAGAACCCAGGGCAACAATTCTCTCCTACGTTTGCTACAAAAATCCAGGCTTCGGTT CTGCGGTTCCGAATATATCCTAGATCAAGTTAGTGGCACTCTTTCTGACACAATGTTAGCGCTTGGATCTCATCTCTAA
AA sequence Show only first row Show all	>Lus10033133 pacid=23178048 polypeptide=Lus10033133 locus=Lus10033133.g ID=Lus10033133.BGIv1.0 annot-version=v1.0 MDSITPPQCPNTVTVRRNPPRRARPTPMKYPAPINMEELLPNPQPDPPSSSAAQAPAPDSLKVFLRIKPVVRVNATAASKLLAASKLRTKNAWPQNPTAK KNSTKEKPVSEVCISMNDCQSVTISPPPSLVESKKIKSEIYEGFSHVFAPDSLQSEVYDKMVKPMVDDFLQGRNGMLAALGPSGSGKTHTVFGTSREPGM VPLALQHIFKQSKGSDRNLSRIFMKGSIQYAMIVLAIGFAPYNSVMCELCRSFFLSIFEIYSEKGRGERICDLIPERVQSGLRTSAKGVIIPNASKAESL IACAMLKRATSMTNTNSQSSRSQCIINVRMLVEKQDGELGGQPCDVMLTIVDLAGAEREKKTGNQGAKLLESNFINNTSMVFGLCLRALLEHQKNPKKQL QMHYQNSLLTRYLREYLEGKKRMNLILTVKPGEEDYLDTSYLLRQASPYMKIKFNNLDDTSGLVRKRRPVQFLSKVGQDKRLKPSDVDVQPEQRKANGPE NLTLQEDPTNEAPTIDNSDSVITSPIHFNSTESLTTDRSHTIMKNFAKAIWSVLKQYKERLVLVEREVQNVSENLVNEKARRIELEKELLDLKSRCACFK KNKVEATLLKVNTKIEVHENLADNDADESQGVLKSNSGRSSRMAEPFLEQIQQDVGIFPEINANTGSTCEADECCSSWSELDINVVKEEDLIEEQVRSIS GELGNDKADPVDIQSVVHGEENVDLQLSPACQDENEQSSVQATSFIEDQVQSTSGDPRSNRKECLNLTEELQSVVHGEERDDLQRSPARYRGNEQSSVQA TSVIEVQVQSTSGDSRNSRTESFNLMEELVDIQPVVHGEEYVDLQPCPARYEENEQSSVQAASVIEDQVQSTSGDPRNNRLECLDLTEELVDIQSGVHAE EHVDLQQRPALFKEDEKSSVQATMERHQSGRLEKRGKGGKKLGVDETKRTQGNNSLLRLLQKSRLRFCGSEYILDQVSGTLSDTMLALGSHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	0	1
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10030028 [exp]	1.0	0.9803
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	2.4	0.9759
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	3.9	0.9651
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	4.2	0.9609
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	4.7	0.9562
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	5.7	0.9705
AT2G22610			Di-glucose binding protein wit...		Lus10035954 [exp]	6.0	0.9671
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	6.9	0.9591
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10016015 [exp]	8.4	0.9570
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	12.4	0.9593

Compare expression of checked genes

Lus10033133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.