Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75810 130 / 2e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034536 [exp] 204 / 1e-69 AT1G75810 137 / 3e-43 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020200 [exp] 156 / 6e-51 AT1G75810 135 / 3e-42 unknown protein Potri.005G241200 [exp] 154 / 7e-50 AT1G75810 140 / 1e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033134 pacid=23178082 polypeptide=Lus10033134 locus=Lus10033134.g ID=Lus10033134.BGIv1.0 annot-version=v1.0 ATGGCGATTTCGGATGCGGTGACTGGAAATTTGACGACGATCTACGTGGCGGTGATAGCCGGGATCAAGGCCTACGGGATGGTATGCGGGCGGCACTTCG GGACAGGGTTCGTCCTCATGGCTTCCACCACCGTGGTAGGTTTAATCCTTGTCGCGACACTCACCTGGGATGTCTCCCGTAAGGCTACTCACGCCATCAC CCGGGAGCGTACCTGTCGATCGCCTTCACACCACATGTGCAAGGGTGGCATTTGCTGGCATGGCGTCGCCGTCCGATCTCCTGCTTCTCAGGTCCGGTTC AGGCTCCCCCATCATCCGGCTCCTCCTCCGCCGCCATTTGCCGCCTGGTGA
AA sequence Show only first row Show all	>Lus10033134 pacid=23178082 polypeptide=Lus10033134 locus=Lus10033134.g ID=Lus10033134.BGIv1.0 annot-version=v1.0 MAISDAVTGNLTTIYVAVIAGIKAYGMVCGRHFGTGFVLMASTTVVGLILVATLTWDVSRKATHAITRERTCRSPSHHMCKGGICWHGVAVRSPASQVRF RLPHHPAPPPPPFAAW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75810			unknown protein		Lus10033134 [exp]	0	1
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	1.4	0.8866
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10003738 [exp]	1.7	0.8652
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10023719 [exp]	2.0	0.8662
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Lus10021551 [exp]	6.5	0.8181
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	6.5	0.8555
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	6.6	0.8640
AT5G02090			unknown protein		Lus10024357 [exp]	7.1	0.8617
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	7.3	0.8562
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10030068 [exp]	8.2	0.8151
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	9.2	0.8098

Compare expression of checked genes

Lus10033134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.