Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 368 / 7e-128 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 347 / 9e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 310 / 1e-105 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 308 / 4e-105 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT2G17860 296 / 1e-100 Pathogenesis-related thaumatin superfamily protein (.1) AT5G38280 290 / 3e-93 PR5K PR5-like receptor kinase (.1) AT4G38660 275 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 263 / 2e-87 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G19320 241 / 2e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 238 / 8e-78 PR-5, PR5 pathogenesis-related gene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034534 [exp] 583 / 0 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 460 / 4e-164 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 304 / 3e-103 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 303 / 1e-102 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 283 / 2e-94 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 281 / 9e-94 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10036435 [exp] 285 / 1e-89 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10023897 [exp] 263 / 6e-88 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 259 / 4e-85 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020500 [exp] 407 / 2e-143 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 401 / 5e-141 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 331 / 8e-114 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 297 / 4e-100 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.004G014574 [exp] 291 / 9e-99 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 293 / 3e-98 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.001G222100 [exp] 277 / 3e-93 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020400 [exp] 278 / 7e-93 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G221400 [exp] 275 / 1e-92 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 273 / 2e-91 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10033136 pacid=23178042 polypeptide=Lus10033136 locus=Lus10033136.g ID=Lus10033136.BGIv1.0 annot-version=v1.0 ATGACTCAACTGATTCCTCCACTTCTAATCCTTTCCCTAATTGCAGCTTATTTCGGTGTATCCGCCGTCGTTTCAACCACTTTCACCATCACAAACGAAT GCGATCACACGGTATGGCCGGGGATCCTCTCTAACGCCGACGCGCCTCCCCTCTCCACCGCGGGCTTCCCGCTTCAGAAAGGTGAAACCCGGTCTAAATC CGCCCCGGCTTCATGGGGGGGTCGCATGTGGGGCCGGACTCACTGCTCCGAAGACGACTCCACCGGTAAATTCGCCTGCCTCACCGGTGATTGCGGCTCC GGAAAGATGGAGTGTTCCGGCAACGGTGCGATTCCTCCGGCGACCCTGGTGGAATTCAAACTTGACGGCTACGATGGCCAGGATTTCTATGACGTCAGCC TCGTCGATGGCTATAATCTCCCGGTCCTAGTCTCTCCGCAGGGAGGCTCCGGCAAGAACTGTTCTAGCACGGGGTGCGTGGTAGATCTGAACGGCAGCTG CCCTTCCGATCTTAAGGTAACGACCTCCGCTGGCGAGGGCGTGGCTTGCAAGAGCGCGTGTGAGGCTTTCCGTCAGCCACAGTACTGCTGTAACGGAGCT TACTCAACGCCGGACACTTGTCCACCGACTTCATACTCGTTAGCTTTCAAGAACAAGTGCCCACGCGCTTACAGCTACGCGTACGATGACAAAACAAGCA CCTTCACATGTACTTCCGCCCATTCCTACTCCATCACCTTCTGTCCAAATCCCAGCCCCAGCCAAAAGGCGTCACAGGATCAGAGCCCGCCCCAGAACCC GAAGACGGGAGGAGAGGAGGGGAAGAACGTTGGAGAGCCGTTTAGTAACGGCACAATGGTGTACGAAGGAGGCGAATTGTTGTCAAGCCATGGTACCCAC GTGGAGACATCTGTCAGCATCGCACTGGCCATCTGCCTGCTGTTGATGCACTTCTTCTGA
AA sequence Show only first row Show all	>Lus10033136 pacid=23178042 polypeptide=Lus10033136 locus=Lus10033136.g ID=Lus10033136.BGIv1.0 annot-version=v1.0 MTQLIPPLLILSLIAAYFGVSAVVSTTFTITNECDHTVWPGILSNADAPPLSTAGFPLQKGETRSKSAPASWGGRMWGRTHCSEDDSTGKFACLTGDCGS GKMECSGNGAIPPATLVEFKLDGYDGQDFYDVSLVDGYNLPVLVSPQGGSGKNCSSTGCVVDLNGSCPSDLKVTTSAGEGVACKSACEAFRQPQYCCNGA YSTPDTCPPTSYSLAFKNKCPRAYSYAYDDKTSTFTCTSAHSYSITFCPNPSPSQKASQDQSPPQNPKTGGEEGKNVGEPFSNGTMVYEGGELLSSHGTH VETSVSIALAICLLLMHFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	0	1
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10011215 [exp]	1.0	0.8403
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	1.7	0.8305
AT4G35320			unknown protein		Lus10022985 [exp]	3.5	0.8396
AT5G25170			PPPDE putative thiol peptidase...		Lus10041021 [exp]	5.9	0.7562
					Lus10024338 [exp]	9.5	0.7885
					Lus10010492 [exp]	10.0	0.8124
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	11.7	0.7703
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	12.0	0.7699
AT4G35320			unknown protein		Lus10001621 [exp]	12.0	0.8130
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	13.7	0.7888

Compare expression of checked genes

Lus10033136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.