Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42470 491 / 2e-174 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034533 [exp] 761 / 0 AT5G42470 480 / 6e-170 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240000 [exp] 605 / 0 AT5G42470 504 / 8e-180 unknown protein Potri.002G021700 [exp] 586 / 0 AT5G42470 509 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06113 [flax] [poplar] BRE Brain and reproductive organ-expressed protein (BRE)
Representative CDS sequence Show only first row Show all	>Lus10033139 pacid=23178026 polypeptide=Lus10033139 locus=Lus10033139.g ID=Lus10033139.BGIv1.0 annot-version=v1.0 ATGCCTTACGATGGTTTCCCGCCTTTCGTATCCGCTCAACTTCAGTACCTTCTCAATCACTCCTCTCACCTGATAAAGGTAGACCAAGTTTGGTTCGGGA CCAAGTACTACCCTGGAGCTTATGATCGTTTCACTTTACTCATTCCCTACTGCCTAGACTACATCAAATGGGACGTGGTGTACAATGCTGAATTGCCTAT GGCTGCACCGGACATCATTTTTGCACATGAAGATGAAGATTTCCATCCGTTTCACCAGGCCCGTGACAGCGAAGGGGGAGGAAAGCTGCTTGAGAGTAGT TTATGCAAATGGAACTTCAAAGACCCTACGTGCCTGTTCAATTTAATTGAGGAGTTGAGGAACAAGTATGTCCTGTACCAAACAAATCGTGTTGAACGAG TTGATGATGAGCGATTGAAGTTTGAGATTAGCACCATTATATCCAGGGAGGGAATCGAAATGCACATGAGTTCTGGTATTGACAAGCCAGAGGAGGTGAA ATTTGCTGTGCCTTTATTGGACATGAACATAAACAAAATGGTACTTGCATGTCCTTGGAGACACCAACAGAAGATATACTTGCAGGTTGTATATCCAGTC GGGAGAAAGTATGTTTCCACCCCTGCAGCCCCTCGTCTAAAATTAACGAGTACTGCAGAGTTGAAGGCTCTGTTTTCCGTTGATGATATCAAACTTCCTT CTTGGGTCGATGCAATGTGTTTGGCTGAATATCTACCCCATATAGAGGAACTTCTACAGAGGCAGGTCTTGGAGGCAGTTTCTCTGATTGATGTCAGAAG GCATTTTATTGAGGCATTGGCGCCCTTGTTTGGCAGGCCACTAGAAGCTGACCCTGTCTTCTGCAGAAAGGCCACTTTTCTTGCCTCCTCTGGACCATTT ACATTCCTGGTGCATGTTTTCATATCAACTCAGTTTCCTAAACAAACTCCCGCTTTGATGCTTCAAAGTACTCAGCATTTTAATTCTAGAGGCATGCCAG TGAAGTCAGCTCTTCTGGCCGAATATCCATGGAGCCCTAGATGGGAAGTGTCACTAATGGCAGAGAAAATCCACGAATTCTTGGTGGATGAGTGCCTGAG CTTCAAGAGGCACTGCAACGAATCTCAAGTTCAACAGTAA
AA sequence Show only first row Show all	>Lus10033139 pacid=23178026 polypeptide=Lus10033139 locus=Lus10033139.g ID=Lus10033139.BGIv1.0 annot-version=v1.0 MPYDGFPPFVSAQLQYLLNHSSHLIKVDQVWFGTKYYPGAYDRFTLLIPYCLDYIKWDVVYNAELPMAAPDIIFAHEDEDFHPFHQARDSEGGGKLLESS LCKWNFKDPTCLFNLIEELRNKYVLYQTNRVERVDDERLKFEISTIISREGIEMHMSSGIDKPEEVKFAVPLLDMNINKMVLACPWRHQQKIYLQVVYPV GRKYVSTPAAPRLKLTSTAELKALFSVDDIKLPSWVDAMCLAEYLPHIEELLQRQVLEAVSLIDVRRHFIEALAPLFGRPLEADPVFCRKATFLASSGPF TFLVHVFISTQFPKQTPALMLQSTQHFNSRGMPVKSALLAEYPWSPRWEVSLMAEKIHEFLVDECLSFKRHCNESQVQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42470			unknown protein		Lus10033139 [exp]	0	1
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	1.4	0.8039
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	2.8	0.7670
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	3.9	0.7809
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	4.2	0.7885
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	7.9	0.7922
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	7.9	0.7734
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10029908 [exp]	11.2	0.7290
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	12.0	0.7669
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	12.8	0.7826
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	13.6	0.7748

Compare expression of checked genes

Lus10033139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.