Plant FIBer expression Database

Lus10033140 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31870 381 / 2e-124 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034532
[exp]
750 / 0 AT1G31870 451 / 4e-154 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G087200
[exp]
402 / 6e-133 AT1G31870 418 / 1e-140 unknown protein
Potri.001G147100
[exp]
112 / 4e-27 AT1G31870 111 / 2e-27 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09736 Bud13 Pre-mRNA-splicing factor of RES complex
Representative CDS sequence
>Lus10033140 pacid=23178054 polypeptide=Lus10033140 locus=Lus10033140.g ID=Lus10033140.BGIv1.0 annot-version=v1.0
ATGGAAACTGCATCCTCTACATCAGTCTCTCTGAAGGAATACCTGAGAAAACACTATGAAACTAATGATGAACAAGATAAAAAGAAAAAGAAGAAGAGAA
AGATTAAGCAAGTTGCAACAGGTGTCTCTGTTGTGGATGAAGATCCTGTGTGGCAAAAACCTGTGAAATTTGAGGAAGAAGAAAACAATGACTCTCCAGA
TGAAGAGCCTCAAGTTGATGAAGATATAGAAGTCAAGCGACTAAAGAGGCTTGAAAAACTCAGAGCTAAGCAATCCATTAATGCCATAGCTGAGGATGGG
AGTGGTTGGGTATCACTTTCTCCAAAGCGTGCAGATCCGTTTGCCACAAGTTCTGATATGTCTCCACCACGTCAGAATAGTACCCGGAATGACACACCTT
CTCCTGAACTTGATAGAAGTAGAGAAAACAATAGGCATTTTAGTTCTGATATATCACCCCCTCGTAAGAAGAGATCAGAAGATGATTCGCCTAGGGTACA
GCCAGGATTTTATCACTCTGTGGAAGATAAAGACTTCTCTCCTCCACGGAAGCGACATCAACATCATGATATTCATCCGATTGATAATCTCAGAAGAACC
ATTCCTAGCTCTTGTACTATAAGCTCTGCCTTGTCTCCTCCTCGTAAGCAAAGAGCTCGATATGACACGCCTTCCCCAGATCCTGTTTTGAGGGATTCTA
GGCAAGATGAAGAGCCTCAAGTTGATGAAGATATAGAAGTCAAGCGACTAAAGAGGCTTGAACAACTCAGAGCTAAGCAATCCATTAATGCCATAGCTGA
GGATGGGAGTGGTTGGGTATCACTTTCTCCAAAGCGTGCAGATCCGTTTGCCACAAGTTCTGATATGTCTCCACCACGTCAGAATAGTACCCGGAATGAC
ACACCTTCTCCTGAACTTGATAGAAGTAGAGAAAACAATAGGCATTTTAGTTCTGATATATCACCCCCTCGTAAGAAGAGATCAGAAGATGATTCGCCTA
GGGTACAGCCAGGATTTTATCACTCTGTGGAAGATAAAGACTTCTCTCCTCCACGGAAGCAACATCAATATCATGATATTCATCCAATTGATAATATCAG
AAGAACCATTCCTAGCTCTAGTACTATAAGCTCTGACTTGTCTCCTCCTCGTAAGCAAAGAGCTCGATATGACACACCTTCCCCAGAACCTGTTTTGAGG
GATTCTAGAACAGGTGCTGATCTTTCACCCCCAAGAAAAAGCAGGAAGGATGTGGTTACACCACGTTCTGGGGCTCCAACATGGTCATCAGCTAATGACA
ATTCATTGAATGATGATCTGTCACCCCCAAGAAAGAAAAGGGATGGAGCATCTGATTCAGTTGGTGCCAAGGAACAACCACTAACTGGTCTAGTTAGTGG
TCATGATATCAGCAAAGAGATTTTGAGAAAAAAGAAAAACGATATGCTTCGGTTTGAAGAAATGGCTCCTGATGTAAGTGGGAAAGGTGCAGAGCCTGTT
TATCGTGGCAAAAAAGGAGAGCGCATATCGAAGGAAGAGTACTTGAAATCAAAAGAAAAGAAAGAAGAAAAGCCAAAGGAGAAGAAGATAGAATGGGGTA
AAGGCTTGGCTCAAAAGCGTGAAGTGGAGGCTAAGGTGCGGGAATTAGAGGTTGAGAAGGAAAAGCCATTTGCCAGGACGAGAGATGATCCTGAACTTGA
CACGATGCTTAAGGAGCGGCTTAGATGGGGTGATCCAATGGCACATTTGGTCAAGAAAAGAGGTACTGAACAAGTTCTTTCTGACCTGGGAGATGATGAA
AAAATGAAGGAATCCGGGTTTATAATTCCCCAGGAAATCCCTAGTCACAGTTGGATAAAGAGAGGTTTACCTGCTGCGCCAAATAGATATGGTATAAAGC
CTGGACGACATTGGGATGGTGTCGACCGAAGTAACGGATATGAGAAGCAGTTCTTCAAAAGAGCGAATGACAAGCAAGCAACAGAACGTGAAGCTTATTT
GTGGTCTGTATCCGATATGTAA
AA sequence
>Lus10033140 pacid=23178054 polypeptide=Lus10033140 locus=Lus10033140.g ID=Lus10033140.BGIv1.0 annot-version=v1.0
METASSTSVSLKEYLRKHYETNDEQDKKKKKKRKIKQVATGVSVVDEDPVWQKPVKFEEEENNDSPDEEPQVDEDIEVKRLKRLEKLRAKQSINAIAEDG
SGWVSLSPKRADPFATSSDMSPPRQNSTRNDTPSPELDRSRENNRHFSSDISPPRKKRSEDDSPRVQPGFYHSVEDKDFSPPRKRHQHHDIHPIDNLRRT
IPSSCTISSALSPPRKQRARYDTPSPDPVLRDSRQDEEPQVDEDIEVKRLKRLEQLRAKQSINAIAEDGSGWVSLSPKRADPFATSSDMSPPRQNSTRND
TPSPELDRSRENNRHFSSDISPPRKKRSEDDSPRVQPGFYHSVEDKDFSPPRKQHQYHDIHPIDNIRRTIPSSSTISSDLSPPRKQRARYDTPSPEPVLR
DSRTGADLSPPRKSRKDVVTPRSGAPTWSSANDNSLNDDLSPPRKKRDGASDSVGAKEQPLTGLVSGHDISKEILRKKKNDMLRFEEMAPDVSGKGAEPV
YRGKKGERISKEEYLKSKEKKEEKPKEKKIEWGKGLAQKREVEAKVRELEVEKEKPFARTRDDPELDTMLKERLRWGDPMAHLVKKRGTEQVLSDLGDDE
KMKESGFIIPQEIPSHSWIKRGLPAAPNRYGIKPGRHWDGVDRSNGYEKQFFKRANDKQATEREAYLWSVSDM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31870 unknown protein Lus10033140
[exp]
0 1
AT5G14440 Surfeit locus protein 2 (SURF2... Lus10022288
[exp]
1.4 0.9211
AT5G42000 ORMDL family protein (.1.2) Lus10033219
[exp]
4.2 0.9006
AT1G71980 Protease-associated (PA) RING/... Lus10014823
[exp]
4.5 0.8932
Lus10003603
[exp]
4.9 0.9165
AT2G06210 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, ... Lus10000472
[exp]
5.7 0.8970
AT1G32420 F-box and associated interacti... Lus10016866
[exp]
6.2 0.8878
AT3G02790 C2H2ZnF zinc finger (C2H2 type) family... Lus10036432
[exp]
8.5 0.9025
AT3G58680 MBF1B, ATMBF1B multiprotein bridging factor 1... Lus10013686
[exp]
8.8 0.8973
AT4G12710 ARM repeat superfamily protein... Lus10041090
[exp]
10.5 0.8700
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Lus10004607
[exp]
10.9 0.8795

Lus10033140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.